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This page was generated on 2022-01-21 11:06:28 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for psichomics on nebbiolo1


To the developers/maintainers of the psichomics package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/psichomics.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1474/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
psichomics 1.21.0  (landing page)
Nuno Saraiva-Agostinho
Snapshot Date: 2022-01-20 13:55:17 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/psichomics
git_branch: master
git_last_commit: 9ecda58
git_last_commit_date: 2021-10-26 12:30:49 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: psichomics
Version: 1.21.0
Command: /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data psichomics
StartedAt: 2022-01-20 17:17:22 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 17:20:26 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 183.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.15-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data psichomics
###
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* checking for file ‘psichomics/DESCRIPTION’ ... OK
* preparing ‘psichomics’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘AS_events_preparation.Rmd’ using rmarkdown
Loading required package: shiny
Loading required package: shinyBS
Registered S3 method overwritten by 'quantmod':
  method            from
  as.zoo.data.frame zoo 
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)

psichomics 1.21.0: start the visual interface by running psichomics()
Full documentation and tutorials at https://nuno-agostinho.github.io/psichomics
--- finished re-building ‘AS_events_preparation.Rmd’

--- re-building ‘CLI_tutorial.Rmd’ using rmarkdown
Warning in cor.test.default(exprNum, eventPSInum, ...) :
  Cannot compute exact p-value with ties
Time difference of 2.82 secs
Time difference of 0.101 secs
Time difference of 0.00083 secs
Time difference of 0.00267 secs
Quitting from lines 474-520 (CLI_tutorial.Rmd) 
Error: processing vignette 'CLI_tutorial.Rmd' failed with diagnostics:
Need Amean component in fit to estimate trend
--- failed re-building ‘CLI_tutorial.Rmd’

--- re-building ‘GUI_tutorial.Rmd’ using rmarkdown
--- finished re-building ‘GUI_tutorial.Rmd’

--- re-building ‘custom_data.Rmd’ using rmarkdown
--- finished re-building ‘custom_data.Rmd’

SUMMARY: processing the following file failed:
  ‘CLI_tutorial.Rmd’

Error: Vignette re-building failed.
Execution halted