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This page was generated on 2022-06-24 11:08:24 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for projectR on lconway


To the developers/maintainers of the projectR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/projectR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1488/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
projectR 1.13.0  (landing page)
Genevieve Stein-O'Brien
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/projectR
git_branch: master
git_last_commit: 8f9dc56
git_last_commit_date: 2022-04-26 11:54:02 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    ERROR  skippedskipped

Summary

Package: projectR
Version: 1.13.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data projectR
StartedAt: 2022-06-23 17:31:17 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 17:32:04 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 46.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
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###   /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data projectR
###
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* checking for file ‘projectR/DESCRIPTION’ ... OK
* preparing ‘projectR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘projectR.Rmd’ using rmarkdown

Attaching package: 'gridExtra'

The following object is masked from 'package:Biobase':

    combine

The following object is masked from 'package:BiocGenerics':

    combine

This is pdfTeX, Version 3.141592653-2.6-1.40.24 (TeX Live 2022) (preloaded format=pdflatex)
 restricted \write18 enabled.
entering extended mode
! LaTeX Error: Environment CSLReferences undefined.

Error: processing vignette 'projectR.Rmd' failed with diagnostics:
LaTeX failed to compile /private/tmp/RtmpxeMcbz/Rbuildc1c930884415/projectR/vignettes/projectR.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See projectR.log for more info.
--- failed re-building ‘projectR.Rmd’

SUMMARY: processing the following file failed:
  ‘projectR.Rmd’

Error: Vignette re-building failed.
Execution halted