##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r orthos -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data orthos
###
##############################################################################
##############################################################################


* checking for file 'orthos/DESCRIPTION' ... OK
* preparing 'orthos':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'orthosIntro.Rmd' using rmarkdown
Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done

## Package Plan ##

  environment location: C:\Users\biocbuild\.basilisk\1.17.1\orthos\1.3.0\orthos

  added / updated specs:
    - python=3.8.13


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    python-3.8.13              |hcf16a7b_0_cpython        16.9 MB  conda-forge
    ------------------------------------------------------------
                                           Total:        16.9 MB

The following NEW packages will be INSTALLED:

  bzip2              conda-forge/win-64::bzip2-1.0.8-h2466b09_7 
  ca-certificates    conda-forge/win-64::ca-certificates-2024.7.4-h56e8100_0 
  libffi             conda-forge/win-64::libffi-3.4.2-h8ffe710_5 
  libsqlite          conda-forge/win-64::libsqlite-3.46.0-h2466b09_0 
  libzlib            conda-forge/win-64::libzlib-1.3.1-h2466b09_1 
  openssl            conda-forge/win-64::openssl-3.3.1-h2466b09_2 
  pip                conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 
  python             conda-forge/win-64::python-3.8.13-hcf16a7b_0_cpython 
  setuptools         conda-forge/noarch::setuptools-71.0.4-pyhd8ed1ab_0 
  sqlite             conda-forge/win-64::sqlite-3.46.0-h2466b09_0 
  tk                 conda-forge/win-64::tk-8.6.13-h5226925_1 
  ucrt               conda-forge/win-64::ucrt-10.0.22621.0-h57928b3_0 
  vc                 conda-forge/win-64::vc-14.3-h8a93ad2_20 
  vc14_runtime       conda-forge/win-64::vc14_runtime-14.40.33810-ha82c5b3_20 
  vs2015_runtime     conda-forge/win-64::vs2015_runtime-14.40.33810-h3bf8584_20 
  wheel              conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 
  xz                 conda-forge/win-64::xz-5.2.6-h8d14728_0 


Preparing transaction: ...working... done
Verifying transaction: ...working... done
Executing transaction: ...working... done
Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... done


==> WARNING: A newer version of conda exists. <==
    current version: 24.3.0
    latest version: 24.5.0

Please update conda by running

    $ conda update -n base -c conda-forge conda



# All requested packages already installed.

Channels:
 - conda-forge
Platform: win-64
Collecting package metadata (repodata.json): ...working... done
Solving environment: ...working... 
Quitting from lines 281-285 [unnamed-chunk-4] (orthosIntro.Rmd)
Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics:
one or more Python packages failed to install [error code 5]
--- failed re-building 'orthosIntro.Rmd'

SUMMARY: processing the following file failed:
  'orthosIntro.Rmd'

Error: Vignette re-building failed.
Execution halted