############################################################################## ############################################################################## ### ### Running command: ### ### /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 orthos ### ############################################################################## ############################################################################## * checking for file ‘orthos/DESCRIPTION’ ... OK * preparing ‘orthos’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘orthosIntro.Rmd’ using rmarkdown Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ## Package Plan ## environment location: /var/cache/basilisk/1.17.1/orthos/1.3.0/orthos added / updated specs: - python=3.8.13 The following packages will be downloaded: package | build ---------------------------|----------------- python-3.8.13 |ha86cf86_0_cpython 25.2 MB conda-forge ------------------------------------------------------------ Total: 25.2 MB The following NEW packages will be INSTALLED: _libgcc_mutex conda-forge/linux-64::_libgcc_mutex-0.1-conda_forge _openmp_mutex conda-forge/linux-64::_openmp_mutex-4.5-2_gnu bzip2 conda-forge/linux-64::bzip2-1.0.8-h4bc722e_7 ca-certificates conda-forge/linux-64::ca-certificates-2024.7.4-hbcca054_0 ld_impl_linux-64 conda-forge/linux-64::ld_impl_linux-64-2.40-hf3520f5_7 libffi conda-forge/linux-64::libffi-3.4.2-h7f98852_5 libgcc-ng conda-forge/linux-64::libgcc-ng-14.1.0-h77fa898_0 libgomp conda-forge/linux-64::libgomp-14.1.0-h77fa898_0 libnsl conda-forge/linux-64::libnsl-2.0.1-hd590300_0 libsqlite conda-forge/linux-64::libsqlite-3.46.0-hde9e2c9_0 libuuid conda-forge/linux-64::libuuid-2.38.1-h0b41bf4_0 libzlib conda-forge/linux-64::libzlib-1.3.1-h4ab18f5_1 ncurses conda-forge/linux-64::ncurses-6.5-h59595ed_0 openssl conda-forge/linux-64::openssl-3.3.1-h4bc722e_2 pip conda-forge/noarch::pip-24.0-pyhd8ed1ab_0 python conda-forge/linux-64::python-3.8.13-ha86cf86_0_cpython readline conda-forge/linux-64::readline-8.2-h8228510_1 setuptools conda-forge/noarch::setuptools-71.0.4-pyhd8ed1ab_0 sqlite conda-forge/linux-64::sqlite-3.46.0-h6d4b2fc_0 tk conda-forge/linux-64::tk-8.6.13-noxft_h4845f30_101 wheel conda-forge/noarch::wheel-0.43.0-pyhd8ed1ab_1 xz conda-forge/linux-64::xz-5.2.6-h166bdaf_0 Preparing transaction: ...working... done Verifying transaction: ...working... done Executing transaction: ...working... done Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... done ==> WARNING: A newer version of conda exists. <== current version: 24.3.0 latest version: 24.5.0 Please update conda by running $ conda update -n base -c conda-forge conda # All requested packages already installed. Channels: - conda-forge Platform: linux-64 Collecting package metadata (repodata.json): ...working... done Solving environment: ...working... failed LibMambaUnsatisfiableError: Encountered problems while solving: - package pandas-1.3.5-py310hb5077e9_0 requires setuptools <60.0.0, but none of the providers can be installed - package libwebp-1.3.2-h658648e_1 requires libtiff >=4.6.0,<4.7.0a0, but none of the providers can be installed - nothing provides libwebp-base 1.1.0 2 needed by libwebp-1.1.0-h56121f0_2 Could not solve for environment specs The following packages are incompatible ├─ icu 70.1** is requested and can be installed; ├─ libdeflate 1.17** is requested and can be installed; ├─ libgd 2.3.3** is installable with the potential options │ ├─ libgd 2.3.3 would require │ │ └─ libwebp with the potential options │ │ ├─ libwebp [1.3.1|1.3.2] would require │ │ │ └─ libtiff >=4.6.0,<4.7.0a0 but there are no viable options │ │ │ ├─ libtiff 4.6.0 would require │ │ │ │ ├─ libdeflate >=1.20,<1.21.0a0 , which conflicts with any installable versions previously reported; │ │ │ │ └─ zstd >=1.5.5,<1.6.0a0 , which can be installed; │ │ │ ├─ libtiff 4.6.0 would require │ │ │ │ ├─ libdeflate >=1.19,<1.20.0a0 , which conflicts with any installable versions previously reported; │ │ │ │ └─ zstd >=1.5.5,<1.6.0a0 , which can be installed; │ │ │ └─ libtiff 4.6.0 would require │ │ │ ├─ libdeflate >=1.18,<1.19.0a0 , which conflicts with any installable versions previously reported; │ │ │ └─ zstd >=1.5.5,<1.6.0a0 , which can be installed; │ │ ├─ libwebp [0.5.1|0.5.2|...|1.3.1], which can be installed; │ │ ├─ libwebp 1.1.0 would require │ │ │ └─ libwebp-base 1.1.0 2, which does not exist (perhaps a missing channel); │ │ └─ libwebp 1.4.0 would require │ │ └─ libpng >=1.6.43,<1.7.0a0 , which can be installed; │ ├─ libgd 2.3.3 would require │ │ └─ icu >=69.1,<70.0a0 , which conflicts with any installable versions previously reported; │ ├─ libgd 2.3.3 would require │ │ └─ icu >=68.1,<69.0a0 , which conflicts with any installable versions previously reported; │ ├─ libgd 2.3.3 would require │ │ └─ icu >=73.2,<74.0a0 , which conflicts with any installable versions previously reported; │ └─ libgd 2.3.3 would require │ └─ icu >=72.1,<73.0a0 , which conflicts with any installable versions previously reported; ├─ libpng 1.6.39** is not installable because it conflicts with any installable versions previously reported; ├─ libwebp-base 1.3.2** is not installable because it requires │ └─ libwebp 1.3.2 , which conflicts with any installable versions previously reported; ├─ libwebp 1.3.2** , which cannot be installed (as previously explained); ├─ pandas 1.3.5** is installable and it requires │ └─ setuptools <60.0.0 , which can be installed; ├─ setuptools 67.7.1** is not installable because it conflicts with any installable versions previously reported; └─ zstd 1.5.2** is not installable because it conflicts with any installable versions previously reported. Quitting from lines 281-285 [unnamed-chunk-4] (orthosIntro.Rmd) Error: processing vignette 'orthosIntro.Rmd' failed with diagnostics: one or more Python packages failed to install [error code 1] --- failed re-building ‘orthosIntro.Rmd’ SUMMARY: processing the following file failed: ‘orthosIntro.Rmd’ Error: Vignette re-building failed. Execution halted