############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ontoProc ### ############################################################################## ############################################################################## * checking for file ‘ontoProc/DESCRIPTION’ ... OK * preparing ‘ontoProc’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ontoProc.Rmd’ using rmarkdown Quitting from lines 51-68 [setup] (ontoProc.Rmd) Error: processing vignette 'ontoProc.Rmd' failed with diagnostics: failed to load resource name: AH97936 title: cellOnto reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded --- failed re-building ‘ontoProc.Rmd’ --- re-building ‘owlents.Rmd’ using rmarkdown * Owlready2 * Warning: ignoring cyclic subclass of/subproperty of, involving: http://purl.obolibrary.org/obo/CHEBI_36080 http://purl.obolibrary.org/obo/PR_000000001 2024-07-25 18:08:26.838 R[4035:38779962] XType: Using static font registry. --- finished re-building ‘owlents.Rmd’ SUMMARY: processing the following file failed: ‘ontoProc.Rmd’ Error: Vignette re-building failed. Execution halted