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This page was generated on 2021-11-25 14:05:08 -0500 (Thu, 25 Nov 2021).

BUILD results for omicRexposome on riesling1

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- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/omicRexposome.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
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raw results

Package 1315/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
omicRexposome 1.17.1  (landing page)
Xavier EscribĂ  Montagut
Snapshot Date: 2021-11-24 14:50:13 -0500 (Wed, 24 Nov 2021)
git_url: https://git.bioconductor.org/packages/omicRexposome
git_branch: master
git_last_commit: 92561ba
git_last_commit_date: 2021-11-21 00:39:38 -0500 (Sun, 21 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: omicRexposome
Version: 1.17.1
Command: chmod a+r omicRexposome -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data omicRexposome
StartedAt: 2021-11-24 22:47:16 -0500 (Wed, 24 Nov 2021)
EndedAt: 2021-11-24 22:52:36 -0500 (Wed, 24 Nov 2021)
EllapsedTime: 319.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r omicRexposome -R && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data omicRexposome
###
##############################################################################
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* checking for file 'omicRexposome/DESCRIPTION' ... OK
* preparing 'omicRexposome':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'exposome_omic_integration.Rmd' using rmarkdown
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Quitting from lines 83-85 (exposome_omic_integration.Rmd) 
Error: processing vignette 'exposome_omic_integration.Rmd' failed with diagnostics:
there is no package called 'brgedata'
--- failed re-building 'exposome_omic_integration.Rmd'

SUMMARY: processing the following file failed:
  'exposome_omic_integration.Rmd'

Error: Vignette re-building failed.
Execution halted