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This page was generated on 2022-06-24 11:08:17 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for netresponse on lconway


To the developers/maintainers of the netresponse package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/netresponse.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1309/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
netresponse 1.57.0  (landing page)
Leo Lahti
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/netresponse
git_branch: master
git_last_commit: af11aa9
git_last_commit_date: 2022-04-26 11:05:56 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: netresponse
Version: 1.57.0
Command: rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh netresponse_1.57.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R netresponse.buildbin-libdir
StartedAt: 2022-06-23 23:48:05 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 23:48:25 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 20.3 seconds
RetCode: 0
Status:   OK  
PackageFile: netresponse_1.57.0.tgz
PackageFileSize: 1.407 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf netresponse.buildbin-libdir && mkdir netresponse.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh netresponse_1.57.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R netresponse.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=netresponse.buildbin-libdir netresponse_1.57.0.tar.gz'
>>>>>>> 

* installing *source* package ‘netresponse’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c netresponse.c -o netresponse.o
netresponse.c:264:15: warning: unused variable 'prior_fields' [-Wunused-variable]
  const char *prior_fields[]={"Mumu","S2mu",
              ^
netresponse.c:686:6: warning: variable 'Mumu' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:713:21: note: uninitialized use occurs here
  vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, 
                    ^~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:655:15: note: initialize the variable 'Mumu' to silence this warning
  double *Mumu, *S2mu, *Mubar, *Mutilde, 
              ^
               = NULL
netresponse.c:686:6: warning: variable 'S2mu' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:713:27: note: uninitialized use occurs here
  vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, 
                          ^~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:655:22: note: initialize the variable 'S2mu' to silence this warning
  double *Mumu, *S2mu, *Mubar, *Mutilde, 
                     ^
                      = NULL
netresponse.c:686:6: warning: variable 'Mubar' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:713:33: note: uninitialized use occurs here
  vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, 
                                ^~~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:655:30: note: initialize the variable 'Mubar' to silence this warning
  double *Mumu, *S2mu, *Mubar, *Mutilde, 
                             ^
                              = NULL
netresponse.c:686:6: warning: variable 'Mutilde' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:713:40: note: uninitialized use occurs here
  vdp_mk_log_lambda(Mumu, S2mu, Mubar, Mutilde, 
                                       ^~~~~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:655:40: note: initialize the variable 'Mutilde' to silence this warning
  double *Mumu, *S2mu, *Mubar, *Mutilde, 
                                       ^
                                        = NULL
netresponse.c:686:6: warning: variable 'AlphaKsi' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:714:7: note: uninitialized use occurs here
                    AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, 
                    ^~~~~~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:656:14: note: initialize the variable 'AlphaKsi' to silence this warning
    *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
             ^
              = NULL
netresponse.c:686:6: warning: variable 'BetaKsi' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:714:17: note: uninitialized use occurs here
                    AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, 
                              ^~~~~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:656:24: note: initialize the variable 'BetaKsi' to silence this warning
    *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
                       ^
                        = NULL
netresponse.c:686:6: warning: variable 'KsiAlpha' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:714:26: note: uninitialized use occurs here
                    AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, 
                                       ^~~~~~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:656:35: note: initialize the variable 'KsiAlpha' to silence this warning
    *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
                                  ^
                                   = NULL
netresponse.c:686:6: warning: variable 'KsiBeta' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim1) {
     ^~~~
netresponse.c:714:36: note: uninitialized use occurs here
                    AlphaKsi, BetaKsi, KsiAlpha, KsiBeta, 
                                                 ^~~~~~~
netresponse.c:686:3: note: remove the 'if' if its condition is always true
  if(dim1) {
  ^~~~~~~~~
netresponse.c:656:45: note: initialize the variable 'KsiBeta' to silence this warning
    *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
                                            ^
                                             = NULL
netresponse.c:696:6: warning: variable 'U_p' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim2) {
     ^~~~
netresponse.c:716:7: note: uninitialized use occurs here
                    U_p, U_hat,
                    ^~~
netresponse.c:696:3: note: remove the 'if' if its condition is always true
  if(dim2) {
  ^~~~~~~~~
netresponse.c:656:51: note: initialize the variable 'U_p' to silence this warning
    *AlphaKsi, *BetaKsi, *KsiAlpha, *KsiBeta, *U_p, *prior_alpha,
                                                  ^
                                                   = NULL
netresponse.c:696:6: warning: variable 'U_hat' is used uninitialized whenever 'if' condition is false [-Wsometimes-uninitialized]
  if(dim2) {
     ^~~~
netresponse.c:716:12: note: uninitialized use occurs here
                    U_p, U_hat,
                         ^~~~~
netresponse.c:696:3: note: remove the 'if' if its condition is always true
  if(dim2) {
  ^~~~~~~~~
netresponse.c:661:14: note: initialize the variable 'U_hat' to silence this warning
  SEXP* U_hat;
             ^
              = NULL
11 warnings generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o netresponse.so netresponse.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/netresponse.buildbin-libdir/00LOCK-netresponse/00new/netresponse/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (netresponse)


>>>>>>> 
>>>>>>> FIXING LINKS FOR netresponse.buildbin-libdir/netresponse/libs/netresponse.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "netresponse.buildbin-libdir/netresponse/libs/netresponse.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "netresponse.buildbin-libdir/netresponse/libs/netresponse.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "netresponse.buildbin-libdir/netresponse/libs/netresponse.so"