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This page was generated on 2022-01-19 11:08:17 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for nanotatoR on riesling1


To the developers/maintainers of the nanotatoR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/nanotatoR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1262/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
nanotatoR 1.11.0  (landing page)
Surajit Bhattacharya
Snapshot Date: 2022-01-18 13:55:18 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/nanotatoR
git_branch: master
git_last_commit: e57fa17
git_last_commit_date: 2021-10-26 12:51:40 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'AnnotationDbi' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: nanotatoR
Version: 1.11.0
Command: rm -rf nanotatoR.buildbin-libdir && mkdir nanotatoR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=nanotatoR.buildbin-libdir nanotatoR_1.11.0.tar.gz
StartedAt: 2022-01-18 21:06:19 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 21:07:20 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 61.1 seconds
RetCode: 0
Status:   OK  
PackageFile: nanotatoR_1.11.0.zip
PackageFileSize: 764.6 KiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf nanotatoR.buildbin-libdir && mkdir nanotatoR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=nanotatoR.buildbin-libdir nanotatoR_1.11.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'nanotatoR' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'nanotatoR'
    finding HTML links ... done
    BNDBfrequency                           html  
    DGVfrequency                            html  
    Decipherfrequency                       html  
    FamilyInfoPrep                          html  
    OverlapRNAseq                           html  
    OverlapRNAseq_solo                      html  
    RNAseqcombine                           html  
    RNAseqcombine_solo                      html  
    SVexpression_duo_trio                   html  
    SVexpression_solo                       html  
    buildrunBNBedFiles                      html  
    clinvar_gene                            html  
    extract_clinvar_mod                     html  
    gene_extraction                         html  
    gene_list_generation                    html  
    gtr_gene                                html  
    internalFrequencyTrio_Duo               html  
    internalFrequency_solo                  html  
    makeInternalBNDatabase                  html  
    mergingSMAP_SE                          html  
    mergingSMAP_SVMerge                     html  
    merging_SE_SVMerge                      html  
    nanotatoR                               html  
    nanotatoR_Duo_SVmerge                   html  
    nanotatoR_SVmerge_Trio                  html  
    nanotatoR_main_Duo_SE                   html  
    nanotatoR_main_Solo_SE                  html  
    nanotatoR_main_Solo_SVmerge             html  
    nanotatoR_main_Trio_SE                  html  
    nonOverlapGenes                         html  
    nonOverlapRNAseq                        html  
    nonOverlapRNAseq_solo                   html  
    nonOverlappingDNGenes                   html  
    nonOverlappingUPGenes                   html  
    omim_gene                               html  
    overlapGenes                            html  
    overlapnearestgeneSearch                html  
    overlappingGenes                        html  
    phenoextractHPO_mod                     html  
    readBNBedFiles                          html  
    readSMap                                html  
    readSMap_DLE                            html  
    reading_GTR                             html  
    reading_mim2gene                        html  
    run_bionano_filter_SE_Trio              html  
    run_bionano_filter_SE_duo               html  
    run_bionano_filter_SE_solo              html  
    run_bionano_filter_SVMerge_Trio         html  
    run_bionano_filter_SVMerge_duo          html  
    run_bionano_filter_SVMerge_solo         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'nanotatoR' as nanotatoR_1.11.0.zip
* DONE (nanotatoR)