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This page was generated on 2023-02-06 11:05:17 -0500 (Mon, 06 Feb 2023).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4483
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" 4249
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" 4272
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for motifbreakR on nebbiolo1


To the developers/maintainers of the motifbreakR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/motifbreakR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1241/2164HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
motifbreakR 2.13.0  (landing page)
Simon Gert Coetzee
Snapshot Date: 2023-02-05 14:00:11 -0500 (Sun, 05 Feb 2023)
git_url: https://git.bioconductor.org/packages/motifbreakR
git_branch: master
git_last_commit: 96f78d9
git_last_commit_date: 2022-11-01 11:12:10 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: motifbreakR
Version: 2.13.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data motifbreakR
StartedAt: 2023-02-05 17:04:14 -0500 (Sun, 05 Feb 2023)
EndedAt: 2023-02-05 17:06:05 -0500 (Sun, 05 Feb 2023)
EllapsedTime: 110.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data motifbreakR
###
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* checking for file ‘motifbreakR/DESCRIPTION’ ... OK
* preparing ‘motifbreakR’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘motifbreakR-vignette.Rmd’ using rmarkdown
Quitting from lines 105-112 (motifbreakR-vignette.Rmd) 
Error: processing vignette 'motifbreakR-vignette.Rmd' failed with diagnostics:
there is no package called 'SNPlocs.Hsapiens.dbSNP142.GRCh37'
--- failed re-building ‘motifbreakR-vignette.Rmd’

SUMMARY: processing the following file failed:
  ‘motifbreakR-vignette.Rmd’

Error: Vignette re-building failed.
Execution halted