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This page was generated on 2022-08-18 11:06:51 -0400 (Thu, 18 Aug 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.1 (2022-06-23) -- "Funny-Looking Kid" 4379
palomino4Windows Server 2022 Datacenterx644.2.1 (2022-06-23 ucrt) -- "Funny-Looking Kid" 4161
lconwaymacOS 12.2.1 Montereyx86_644.2.1 Patched (2022-07-09 r82577) -- "Funny-Looking Kid" 4169
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for monocle on palomino4


To the developers/maintainers of the monocle package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/monocle.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1226/2140HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
monocle 2.25.1  (landing page)
Cole Trapnell
Snapshot Date: 2022-08-17 14:00:04 -0400 (Wed, 17 Aug 2022)
git_url: https://git.bioconductor.org/packages/monocle
git_branch: master
git_last_commit: df410d6
git_last_commit_date: 2022-06-08 17:26:28 -0400 (Wed, 08 Jun 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: monocle
Version: 2.25.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/monocle_2.25.1.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.25.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL monocle_2.25.1.zip && rm monocle_2.25.1.tar.gz monocle_2.25.1.zip
StartedAt: 2022-08-17 15:54:45 -0400 (Wed, 17 Aug 2022)
EndedAt: 2022-08-17 15:55:25 -0400 (Wed, 17 Aug 2022)
EllapsedTime: 40.0 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/monocle_2.25.1.tar.gz && rm -rf monocle.buildbin-libdir && mkdir monocle.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=monocle.buildbin-libdir monocle_2.25.1.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL monocle_2.25.1.zip && rm monocle_2.25.1.tar.gz monocle_2.25.1.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
 21 9337k   21 2034k    0     0  4205k      0  0:00:02 --:--:--  0:00:02 4203k
100 9337k  100 9337k    0     0  7230k      0  0:00:01  0:00:01 --:--:-- 7238k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'monocle' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c RcppExports.cpp -o RcppExports.o
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG  -I'F:/biocbuild/bbs-3.16-bioc/R/library/Rcpp/include'   -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c clustering.cpp -o clustering.o
g++ -std=gnu++11 -shared -s -static-libgcc -o monocle.dll tmp.def RcppExports.o clustering.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/monocle.buildbin-libdir/00LOCK-monocle/00new/monocle/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'monocle' as monocle_2.25.1.zip
* DONE (monocle)
* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
package 'monocle' successfully unpacked and MD5 sums checked