############################################################################## ############################################################################## ### ### Running command: ### ### F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD INSTALL mgsa ### ############################################################################## ############################################################################## * installing to library 'F:/biocbuild/bbs-3.20-bioc/R/library' * installing *source* package 'mgsa' ... ** using staged installation ********************************************** WARNING: this package has a configure script It probably needs manual configuration ********************************************** ** libs using C compiler: 'gcc.exe (GCC) 13.2.0' gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mgsa-core.c -o mgsa-core.o mgsa-core.c: In function 'ts_R_alloc': mgsa-core.c:56: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 56 | #pragma omp critical | gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mgsa.c -o mgsa.o mgsa.c: In function 'create_parameter_prior_from_R': mgsa.c:67:44: warning: format '%s' expects a matching 'char *' argument [-Wformat=] 67 | error("Parameter '%s' has been requested to be discrete but no values were specified"); | ~^ | | | char * mgsa.c: In function 'mgsa_mcmc': mgsa.c:552: warning: ignoring '#pragma omp parallel' [-Wunknown-pragmas] 552 | #pragma omp parallel for | mgsa.c:558: warning: ignoring '#pragma omp critical' [-Wunknown-pragmas] 558 | #pragma omp critical | gcc -I"F:/biocbuild/bbs-3.20-bioc/R/include" -DNDEBUG -I"C:/rtools44/x86_64-w64-mingw32.static.posix/include" -O2 -Wall -mfpmath=sse -msse2 -mstackrealign -c mt.c -o mt.o gcc -shared -s -static-libgcc -o mgsa.dll tmp.def mgsa-core.o mgsa.o mt.o -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools44/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.20-bioc/R/bin/x64 -lR installing to F:/biocbuild/bbs-3.20-bioc/R/library/00LOCK-mgsa/00new/mgsa/libs/x64 ** R ** data ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (mgsa)