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This page was generated on 2022-06-24 11:06:45 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for methylclock on palomino4


To the developers/maintainers of the methylclock package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylclock.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1137/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylclock 1.3.0  (landing page)
Dolors Pelegri-Siso
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/methylclock
git_branch: master
git_last_commit: 6542c12
git_last_commit_date: 2022-04-26 12:16:55 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: methylclock
Version: 1.3.0
Command: chmod a+r methylclock -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methylclock
StartedAt: 2022-06-23 19:35:38 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 19:38:03 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 145.3 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r methylclock -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methylclock
###
##############################################################################
##############################################################################


* checking for file 'methylclock/DESCRIPTION' ... OK
* preparing 'methylclock':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'methylclock.Rmd' using rmarkdown
Loading required package: devtools
Loading required package: usethis
Loading required package: quadprog
Setting options('download.file.method.GEOquery'='auto')
Setting options('GEOquery.inmemory.gpl'=FALSE)
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table,
    tapply, union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Loading required package: ggpp

Attaching package: 'ggpp'

The following object is masked from 'package:ggplot2':

    annotate

snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
snapshotDate(): 2022-06-15
see ?methylclockData and browseVignettes('methylclockData') for documentation
loading from cache
Warning: file '22fc76c563d9_7418' has magic number 'SQLit'
  Use of save versions prior to 2 is deprecated
Quitting from lines 205-209 (methylclock.Rmd) 
Error: processing vignette 'methylclock.Rmd' failed with diagnostics:
failed to load resource
  name: EH7368
  title: Coefficients EN clock
  reason: error in evaluating the argument 'x' in selecting a method for function 'get': bad restore file magic number (file may be corrupted) -- no data loaded
--- failed re-building 'methylclock.Rmd'

SUMMARY: processing the following file failed:
  'methylclock.Rmd'

Error: Vignette re-building failed.
Execution halted