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This page was generated on 2021-10-22 12:04:33 -0400 (Fri, 22 Oct 2021).

INSTALL results for methylMnM on riesling1

To the developers/maintainers of the methylMnM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylMnM.git to
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raw results

Package 1120/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylMnM 1.31.0  (landing page)
Yan Zhou
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/methylMnM
git_branch: master
git_last_commit: a2a4f3a
git_last_commit_date: 2021-05-19 12:01:17 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    NA  

Summary

Package: methylMnM
Version: 1.31.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/methylMnM_1.31.0.tar.gz && rm -rf methylMnM.buildbin-libdir && mkdir methylMnM.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylMnM.buildbin-libdir methylMnM_1.31.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL methylMnM_1.31.0.zip && rm methylMnM_1.31.0.tar.gz methylMnM_1.31.0.zip
StartedAt: 2021-10-21 16:42:31 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 16:45:44 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 193.1 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/methylMnM_1.31.0.tar.gz && rm -rf methylMnM.buildbin-libdir && mkdir methylMnM.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=methylMnM.buildbin-libdir methylMnM_1.31.0.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL methylMnM_1.31.0.zip && rm methylMnM_1.31.0.tar.gz methylMnM_1.31.0.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  4 8736k    4  417k    0     0  1210k      0  0:00:07 --:--:--  0:00:07 1210k
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 59 8736k   59 5199k    0     0  2136k      0  0:00:04  0:00:02  0:00:02 2135k
 97 8736k   97 8521k    0     0  2515k      0  0:00:03  0:00:03 --:--:-- 2514k
100 8736k  100 8736k    0     0  2547k      0  0:00:03  0:00:03 --:--:-- 2546k

install for i386

* installing *source* package 'methylMnM' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c CpGcount.c -o CpGcount.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calculatecount.c -o calculatecount.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calculatecount1.c -o calculatecount1.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calculatecountneg.c -o calculatecountneg.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pmultinom.c -o pmultinom.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pvalueclassify.c -o pvalueclassify.o
"C:/rtools40/mingw32/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c register.c -o register.o
C:/rtools40/mingw32/bin/gcc -shared -s -static-libgcc -o methylMnM.dll tmp.def CpGcount.o calculatecount.o calculatecount1.o calculatecountneg.o pmultinom.o pvalueclassify.o register.o -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/methylMnM.buildbin-libdir/00LOCK-methylMnM/00new/methylMnM/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'methylMnM'
    finding HTML links ... done
    CNVnormal                               html  
    MnM-package                             html  
    MnM.qvalue                              html  
    MnM.selectDMR                           html  
    MnM.test                                html  
    calcFactornew                           html  
    calculatecount                          html  
    calculatecount1                         html  
    calculatecountneg                       html  
    countMREbin                             html  
    countMREcpgbin                          html  
    countMeDIPbin                           html  
    countcpgbin                             html  
    cpgcount                                html  
    normpdf                                 html  
    normpdf1                                html  
    pmultinom                               html  
    qvalue.rank                             html  
    removeblacklist                         html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'methylMnM' ...
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c CpGcount.c -o CpGcount.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calculatecount.c -o calculatecount.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calculatecount1.c -o calculatecount1.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c calculatecountneg.c -o calculatecountneg.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pmultinom.c -o pmultinom.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c pvalueclassify.c -o pvalueclassify.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c register.c -o register.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o methylMnM.dll tmp.def CpGcount.o calculatecount.o calculatecount1.o calculatecountneg.o pmultinom.o pvalueclassify.o register.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/methylMnM.buildbin-libdir/methylMnM/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'methylMnM' as methylMnM_1.31.0.zip
* DONE (methylMnM)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'methylMnM' successfully unpacked and MD5 sums checked