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This page was generated on 2021-10-23 14:07:06 -0400 (Sat, 23 Oct 2021).

BUILD BIN results for methylMnM on merida1

To the developers/maintainers of the methylMnM package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/methylMnM.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1124/2083HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
methylMnM 1.31.0  (landing page)
Yan Zhou
Snapshot Date: 2021-10-22 14:50:11 -0400 (Fri, 22 Oct 2021)
git_url: https://git.bioconductor.org/packages/methylMnM
git_branch: master
git_last_commit: a2a4f3a
git_last_commit_date: 2021-05-19 12:01:17 -0400 (Wed, 19 May 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: methylMnM
Version: 1.31.0
Command: rm -rf methylMnM.buildbin-libdir && mkdir methylMnM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh methylMnM_1.31.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R methylMnM.buildbin-libdir
StartedAt: 2021-10-23 12:30:08 -0400 (Sat, 23 Oct 2021)
EndedAt: 2021-10-23 12:30:38 -0400 (Sat, 23 Oct 2021)
EllapsedTime: 30.4 seconds
RetCode: 0
Status:   OK  
PackageFile: methylMnM_1.31.0.tgz
PackageFileSize: 8.777 MiB

Command output

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###
### Running command:
###
###   rm -rf methylMnM.buildbin-libdir && mkdir methylMnM.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh methylMnM_1.31.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R methylMnM.buildbin-libdir
###
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>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=methylMnM.buildbin-libdir methylMnM_1.31.0.tar.gz'
>>>>>>> 

* installing *source* package ‘methylMnM’ ...
** using staged installation
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c CpGcount.c -o CpGcount.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c calculatecount.c -o calculatecount.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c calculatecount1.c -o calculatecount1.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c calculatecountneg.c -o calculatecountneg.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pmultinom.c -o pmultinom.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c pvalueclassify.c -o pvalueclassify.o
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG   -I/usr/local/include   -fPIC  -Wall -g -O2  -c register.c -o register.o
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o methylMnM.so CpGcount.o calculatecount.o calculatecount1.o calculatecountneg.o pmultinom.o pvalueclassify.o register.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.14-bioc/meat/methylMnM.buildbin-libdir/00LOCK-methylMnM/00new/methylMnM/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (methylMnM)


>>>>>>> 
>>>>>>> FIXING LINKS FOR methylMnM.buildbin-libdir/methylMnM/libs/methylMnM.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgcc_s.1.dylib" "methylMnM.buildbin-libdir/methylMnM/libs/methylMnM.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libgfortran.5.dylib" "methylMnM.buildbin-libdir/methylMnM/libs/methylMnM.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.1/Resources/lib/libquadmath.0.dylib" "methylMnM.buildbin-libdir/methylMnM/libs/methylMnM.so"