############################################################################## ############################################################################## ### ### Running command: ### ### chmod a+r methodical -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data methodical ### ############################################################################## ############################################################################## * checking for file 'methodical/DESCRIPTION' ... OK * preparing 'methodical': * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building 'calculating_methylation_transcription_correlations.Rmd' using rmarkdown You do not have sufficient privilege to perform this operation. You do not have sufficient privilege to perform this operation. Quitting from lines 51-56 [unnamed-chunk-3] (calculating_methylation_transcription_correlations.Rmd) Error: processing vignette 'calculating_methylation_transcription_correlations.Rmd' failed with diagnostics: directory "F:\biocbuild\bbs-3.20-bioc\tmpdir\RtmpKU2N1a/mcrpc_wgbs_hg38_chr11" does not seem to contain an HDF5-based SummarizedExperiment object previously saved with saveHDF5SummarizedExperiment() --- failed re-building 'calculating_methylation_transcription_correlations.Rmd' --- re-building 'identifying_tmrs.Rmd' using rmarkdown --- finished re-building 'identifying_tmrs.Rmd' --- re-building 'working_with_meth_rses.Rmd' using rmarkdown Quitting from lines 46-48 [unnamed-chunk-2] (working_with_meth_rses.Rmd) Error: processing vignette 'working_with_meth_rses.Rmd' failed with diagnostics: F:\biocbuild\bbs-3.20-bioc\tmpdir\RtmpKU2N1a/mcrpc_wgbs_hg38_chr11 already exists but it does not contain a HDF5 SummarizedExperiment --- failed re-building 'working_with_meth_rses.Rmd' SUMMARY: processing the following files failed: 'calculating_methylation_transcription_correlations.Rmd' 'working_with_meth_rses.Rmd' Error: Vignette re-building failed. Execution halted