Panagiotis Moulos
| Snapshot Date: 2023-02-01 14:00:21 -0500 (Wed, 01 Feb 2023) |
| git_url: https://git.bioconductor.org/packages/metaseqR2 |
| git_branch: master |
| git_last_commit: 36efa5b |
| git_last_commit_date: 2022-11-01 11:22:03 -0500 (Tue, 01 Nov 2022) |
| Back to Multiple platform build/check report for BioC 3.17 |
|
This page was generated on 2023-02-02 11:10:24 -0500 (Thu, 02 Feb 2023).
| Hostname | OS | Arch (*) | R version | Installed pkgs |
|---|---|---|---|---|
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4483 |
| palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2023-01-10 r83596 ucrt) -- "Unsuffered Consequences" | 4249 |
| merida1 | macOS 10.14.6 Mojave | x86_64 | R Under development (unstable) (2023-01-10 r83596) -- "Unsuffered Consequences" | 4272 |
| Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X | ||||
|
To the developers/maintainers of the metaseqR2 package: - Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metaseqR2.git to reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information. - Make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 1144/2164 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
| metaseqR2 1.11.0 (landing page) Panagiotis Moulos
| nebbiolo1 | Linux (Ubuntu 22.04.1 LTS) / x86_64 | OK | OK | WARNINGS | | ||||||||
| palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | WARNINGS | OK | | ||||||||
| merida1 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK | | ||||||||
| Package: metaseqR2 |
| Version: 1.11.0 |
| Command: rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metaseqR2_1.11.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R metaseqR2.buildbin-libdir |
| StartedAt: 2023-02-02 09:06:36 -0500 (Thu, 02 Feb 2023) |
| EndedAt: 2023-02-02 09:10:37 -0500 (Thu, 02 Feb 2023) |
| EllapsedTime: 241.0 seconds |
| RetCode: 0 |
| Status: OK |
| PackageFile: metaseqR2_1.11.0.tgz |
| PackageFileSize: 4.508 MiB |
##############################################################################
##############################################################################
###
### Running command:
###
### rm -rf metaseqR2.buildbin-libdir && mkdir metaseqR2.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh metaseqR2_1.11.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R metaseqR2.buildbin-libdir
###
##############################################################################
##############################################################################
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=metaseqR2.buildbin-libdir metaseqR2_1.11.0.tar.gz'
>>>>>>>
* installing *source* package ‘metaseqR2’ ...
** using staged installation
** libs
using C compiler: ‘Apple clang version 11.0.0 (clang-1100.0.33.17)’
using SDK: ‘’
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -I/usr/local/include -fPIC -Wall -g -O2 -c pval.c -o pval.o
pval.c:26:11: warning: unused variable 'esttotalperlength' [-Wunused-variable]
double esttotalperlength = total/2;
^
1 warning generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o metaseqR2.so pval.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.17-bioc/meat/metaseqR2.buildbin-libdir/00LOCK-metaseqR2/00new/metaseqR2/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘metaseqR2’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘metaseqR2’
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning: replacing previous import ‘GenomicRanges::subtract’ by ‘magrittr::subtract’ when loading ‘metaseqR2’
** testing if installed package keeps a record of temporary installation path
* DONE (metaseqR2)
>>>>>>>
>>>>>>> FIXING LINKS FOR metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgcc_s.1.dylib" "metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libgfortran.5.dylib" "metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.3/Resources/lib/libquadmath.0.dylib" "metaseqR2.buildbin-libdir/metaseqR2/libs/metaseqR2.so"