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This page was generated on 2024-03-28 11:38:00 -0400 (Thu, 28 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4708
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4446
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4471
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4426
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1194/2270HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
metabolomicsWorkbenchR 1.13.0  (landing page)
Gavin Rhys Lloyd
Snapshot Date: 2024-03-27 14:00:18 -0400 (Wed, 27 Mar 2024)
git_url: https://git.bioconductor.org/packages/metabolomicsWorkbenchR
git_branch: devel
git_last_commit: 54aafc7
git_last_commit_date: 2023-10-24 11:25:05 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD results for metabolomicsWorkbenchR on palomino3


To the developers/maintainers of the metabolomicsWorkbenchR package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/metabolomicsWorkbenchR.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results

Summary

Package: metabolomicsWorkbenchR
Version: 1.13.0
Command: chmod a+r metabolomicsWorkbenchR -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metabolomicsWorkbenchR
StartedAt: 2024-03-27 20:18:22 -0400 (Wed, 27 Mar 2024)
EndedAt: 2024-03-27 20:19:30 -0400 (Wed, 27 Mar 2024)
EllapsedTime: 68.1 seconds
RetCode: 0
Status:   OK  
PackageFile: metabolomicsWorkbenchR_1.13.0.tar.gz
PackageFileSize: 2.317 MiB

Command output

##############################################################################
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###
### Running command:
###
###   chmod a+r metabolomicsWorkbenchR -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data metabolomicsWorkbenchR
###
##############################################################################
##############################################################################


* checking for file 'metabolomicsWorkbenchR/DESCRIPTION' ... OK
* preparing 'metabolomicsWorkbenchR':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... OK
* checking for LF line-endings in source and make files and shell scripts
* checking for empty or unneeded directories
* looking to see if a 'data/datalist' file should be added
* building 'metabolomicsWorkbenchR_1.13.0.tar.gz'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/compound/regno/11/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/compound/regno/11/all.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/gene/gene_name/acetyl-CoA/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/gene/gene_name/acetyl-CoA/all.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/data.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/factors.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000001/summary.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/data.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/factors.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000009/summary.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/untarg_studies.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/Diabetes/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/introduction/0/www.metabolomicsworkbench.org/rest/study/study_title/Diabetes/summary.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000010/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ST000010/summary.json'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/'
Warning in utils::tar(filepath, pkgname, compression = compression, compression_level = 9L,  :
  storing paths of more than 100 bytes is not portable:
  'metabolomicsWorkbenchR/vignettes/structToolbox_example/0/www.metabolomicsworkbench.org/rest/study/study_id/ignored/untarg_studies.json'