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This page was generated on 2022-06-30 11:08:12 -0400 (Thu, 30 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4343
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4147
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4159
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for makecdfenv on lconway


To the developers/maintainers of the makecdfenv package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/makecdfenv.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1059/2124HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
makecdfenv 1.73.0  (landing page)
James W. MacDonald
Snapshot Date: 2022-06-29 14:00:05 -0400 (Wed, 29 Jun 2022)
git_url: https://git.bioconductor.org/packages/makecdfenv
git_branch: master
git_last_commit: d9e7e85
git_last_commit_date: 2022-04-26 10:54:49 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: makecdfenv
Version: 1.73.0
Command: rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.73.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R makecdfenv.buildbin-libdir
StartedAt: 2022-06-30 00:21:49 -0400 (Thu, 30 Jun 2022)
EndedAt: 2022-06-30 00:21:58 -0400 (Thu, 30 Jun 2022)
EllapsedTime: 9.7 seconds
RetCode: 0
Status:   OK  
PackageFile: makecdfenv_1.73.0.tgz
PackageFileSize: 3.41 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf makecdfenv.buildbin-libdir && mkdir makecdfenv.buildbin-libdir && /Users/biocbuild/BBS/utils/build-universal.sh makecdfenv_1.73.0.tar.gz /Library/Frameworks/R.framework/Resources/bin/R makecdfenv.buildbin-libdir
###
##############################################################################
##############################################################################


>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --no-multiarch --library=makecdfenv.buildbin-libdir makecdfenv_1.73.0.tar.gz'
>>>>>>> 

* installing *source* package ‘makecdfenv’ ...
** using staged installation
creating cache ./config.cache
checking how to run the C preprocessor... cc -E
checking for main in -lz... yes
checking for zlib.h... yes
checking if zlib version >= 1.1.3... yes
updating cache ./config.cache
creating ./config.status
creating src/Makevars
** libs
clang -mmacosx-version-min=10.13 -I"/Library/Frameworks/R.framework/Resources/include" -DNDEBUG -DHAVE_ZLIB=1   -I/usr/local/include   -fPIC  -Wall -g -O2  -c read_cdffile.c -o read_cdffile.o
read_cdffile.c:576:7: warning: variable 'typeQC' set but not used [-Wunused-but-set-variable]
  int typeQC;
      ^
1 warning generated.
clang -mmacosx-version-min=10.13 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/Library/Frameworks/R.framework/Resources/lib -L/usr/local/lib -o makecdfenv.so read_cdffile.o -lz -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-3.16-bioc/meat/makecdfenv.buildbin-libdir/00LOCK-makecdfenv/00new/makecdfenv/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (makecdfenv)


>>>>>>> 
>>>>>>> FIXING LINKS FOR makecdfenv.buildbin-libdir/makecdfenv/libs/makecdfenv.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgcc_s.1.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libgfortran.5.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libgfortran.5.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/makecdfenv.so"
install_name_tool -change "/usr/local/lib/libquadmath.0.dylib" "/Library/Frameworks/R.framework/Versions/4.2/Resources/lib/libquadmath.0.dylib" "makecdfenv.buildbin-libdir/makecdfenv/libs/makecdfenv.so"