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This page was generated on 2024-02-21 12:53:11 -0500 (Wed, 21 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4657
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4397
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1137/2244HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.75.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2024-02-20 14:10:09 -0500 (Tue, 20 Feb 2024)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: devel
git_last_commit: 1549db0
git_last_commit_date: 2023-10-24 09:35:43 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published

CHECK results for maSigPro on nebbiolo1


To the developers/maintainers of the maSigPro package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: maSigPro
Version: 1.75.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings maSigPro_1.75.0.tar.gz
StartedAt: 2024-02-20 23:46:15 -0500 (Tue, 20 Feb 2024)
EndedAt: 2024-02-20 23:48:30 -0500 (Tue, 20 Feb 2024)
EllapsedTime: 135.2 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings maSigPro_1.75.0.tar.gz
###
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* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/maSigPro.Rcheck’
* using R Under development (unstable) (2024-01-16 r85808)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.3 LTS
* using session charset: UTF-8
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.75.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
IsoModel      10.734  0.003  10.739
ISOdata       10.555  0.043  10.599
ISOdesign     10.489  0.007  10.497
seeDS         10.480  0.012  10.492
PodiumChange  10.428  0.000  10.428
tableDS       10.402  0.004  10.406
getDSPatterns 10.370  0.014  10.383
getDS         10.126  0.079  10.207
IsoPlot       10.141  0.001  10.141
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

##############################################################################
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###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL maSigPro
###
##############################################################################
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* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata10.555 0.04310.599
ISOdesign10.489 0.00710.497
IsoModel10.734 0.00310.739
IsoPlot10.141 0.00110.141
NBdata0.0010.0000.001
NBdesign0.0010.0000.001
PlotGroups0.0260.0000.026
PlotProfiles0.0040.0000.004
PodiumChange10.428 0.00010.428
T.fit4.7250.0834.810
average.rows0.0020.0000.002
data.abiotic0.0000.0040.004
edesign.abiotic0.0010.0000.002
edesignCT0.0010.0000.001
edesignDR0.0010.0000.001
get.siggenes2.1440.0202.165
getDS10.126 0.07910.207
getDSPatterns10.370 0.01410.383
i.rank0.0000.0010.000
maSigProUsersGuide0.0000.0020.003
make.design.matrix0.0030.0070.011
p.vector1.3700.0041.374
position000
reg.coeffs0.0010.0000.000
see.genes0.5250.0080.533
seeDS10.480 0.01210.492
stepback0.0220.0000.022
stepfor0.0860.0000.086
suma2Venn0.0180.0000.020
tableDS10.402 0.00410.406
two.ways.stepback0.0720.0000.072
two.ways.stepfor0.0890.0000.089