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This page was generated on 2022-12-06 11:06:07 -0500 (Tue, 06 Dec 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4277
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-11-30 r83393 ucrt) -- "Unsuffered Consequences" 4193
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4236
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for maSigPro on nebbiolo1


To the developers/maintainers of the maSigPro package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/maSigPro.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 1080/2155HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
maSigPro 1.71.0  (landing page)
Maria Jose Nueda
Snapshot Date: 2022-12-05 14:00:11 -0500 (Mon, 05 Dec 2022)
git_url: https://git.bioconductor.org/packages/maSigPro
git_branch: master
git_last_commit: 62a0aeb
git_last_commit_date: 2022-11-01 10:40:03 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: maSigPro
Version: 1.71.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings maSigPro_1.71.0.tar.gz
StartedAt: 2022-12-05 21:18:22 -0500 (Mon, 05 Dec 2022)
EndedAt: 2022-12-05 21:20:42 -0500 (Mon, 05 Dec 2022)
EllapsedTime: 140.8 seconds
RetCode: 0
Status:   OK  
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

##############################################################################
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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD check --install=check:maSigPro.install-out.txt --library=/home/biocbuild/bbs-3.17-bioc/R/library --timings maSigPro_1.71.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.17-bioc/meat/maSigPro.Rcheck’
* using R Under development (unstable) (2022-11-30 r83393)
* using platform: x86_64-pc-linux-gnu (64-bit)
* using session charset: UTF-8
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.71.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
getDS         10.935  0.032  10.968
tableDS       10.926  0.000  10.927
IsoModel      10.914  0.004  10.920
ISOdata       10.807  0.048  10.855
seeDS         10.838  0.000  10.838
getDSPatterns 10.827  0.001  10.829
IsoPlot       10.814  0.003  10.818
PodiumChange  10.693  0.087  10.782
ISOdesign     10.273  0.009  10.282
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ...
  ‘maSigPro.Rnw’... OK
 NONE
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

maSigPro.Rcheck/00install.out

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###
### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL maSigPro
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘maSigPro’ ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (maSigPro)

Tests output


Example timings

maSigPro.Rcheck/maSigPro-Ex.timings

nameusersystemelapsed
ISOdata10.807 0.04810.855
ISOdesign10.273 0.00910.282
IsoModel10.914 0.00410.920
IsoPlot10.814 0.00310.818
NBdata0.0010.0000.002
NBdesign0.0010.0000.001
PlotGroups0.0270.0030.031
PlotProfiles0.0040.0010.004
PodiumChange10.693 0.08710.782
T.fit4.7940.0284.822
average.rows0.0000.0020.002
data.abiotic0.0040.0000.004
edesign.abiotic0.0000.0020.002
edesignCT0.0000.0010.001
edesignDR0.0010.0000.001
get.siggenes2.2510.0002.251
getDS10.935 0.03210.968
getDSPatterns10.827 0.00110.829
i.rank000
maSigProUsersGuide0.0000.0030.003
make.design.matrix0.0050.0080.012
p.vector1.5470.0071.554
position0.0000.0000.001
reg.coeffs0.0000.0000.001
see.genes0.5140.0120.525
seeDS10.838 0.00010.838
stepback0.0220.0000.023
stepfor0.0890.0000.089
suma2Venn0.0180.0000.018
tableDS10.926 0.00010.927
two.ways.stepback0.0700.0000.071
two.ways.stepfor0.0930.0000.093