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This page was generated on 2024-03-01 11:37:49 -0500 (Fri, 01 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4676
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4414
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4441
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4417
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 1089/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
limmaGUI 1.79.0  (landing page)
Gordon Smyth
Snapshot Date: 2024-02-28 14:00:14 -0500 (Wed, 28 Feb 2024)
git_url: https://git.bioconductor.org/packages/limmaGUI
git_branch: devel
git_last_commit: b4af1eb
git_last_commit_date: 2023-10-24 09:33:24 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD results for limmaGUI on palomino3


To the developers/maintainers of the limmaGUI package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/limmaGUI.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: limmaGUI
Version: 1.79.0
Command: chmod a+r limmaGUI -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data limmaGUI
StartedAt: 2024-02-28 21:28:53 -0500 (Wed, 28 Feb 2024)
EndedAt: 2024-02-28 21:29:38 -0500 (Wed, 28 Feb 2024)
EllapsedTime: 45.4 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r limmaGUI -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data limmaGUI
###
##############################################################################
##############################################################################


* checking for file 'limmaGUI/DESCRIPTION' ... OK
* preparing 'limmaGUI':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'extract.Rnw' using Sweave
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "extract.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.19-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'extract.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'extract.pdf' for vignette with name 'extract' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\Rtmp2LRYWu\Rbuild254848e67458\limmaGUI\vignettes': 'extract.Rnw' (6317 bytes), 'extract.Rnw.txt' (5888 bytes), 'extract.tex' (6338 bytes), 'limmaGUI.Rnw' (1111 bytes)
--- failed re-building 'extract.Rnw'

--- re-building 'limmaGUI.Rnw' using Sweave

Sorry, but "MiKTeX Compiler Driver" did not succeed.

The log file hopefully contains the information to get MiKTeX going again:

  C:\Users\biocbuild\AppData\Local\MiKTeX\miktex\log\texify.log
Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "limmaGUI.tex" ' had status 1033
Error: processing vignette 'limmaGUI.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'limmaGUI.pdf' for vignette with name 'limmaGUI' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\Rtmp2LRYWu\Rbuild254848e67458\limmaGUI\vignettes': 'extract.R' (49 bytes), 'extract.Rnw' (6317 bytes), 'extract.Rnw.txt' (5888 bytes), 'extract.tex' (6338 bytes), 'limmaGUI.Rnw' (1111 bytes), 'limmaGUI.tex' (1238 bytes)
--- failed re-building 'limmaGUI.Rnw'

SUMMARY: processing the following files failed:
  'extract.Rnw' 'limmaGUI.Rnw'

Error: Vignette re-building failed.
Execution halted