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This page was generated on 2022-01-22 11:07:14 -0500 (Sat, 22 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for hermes on riesling1


To the developers/maintainers of the hermes package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/hermes.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 859/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
hermes 0.99.4  (landing page)
Daniel Sabanés Bové
Snapshot Date: 2022-01-21 13:55:18 -0500 (Fri, 21 Jan 2022)
git_url: https://git.bioconductor.org/packages/hermes
git_branch: master
git_last_commit: b43d4dc
git_last_commit_date: 2021-12-07 14:15:34 -0500 (Tue, 07 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    NA    NA  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'SummarizedExperiment' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: hermes
Version: 0.99.4
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL hermes
StartedAt: 2022-01-21 16:00:09 -0500 (Fri, 21 Jan 2022)
EndedAt: 2022-01-21 16:01:10 -0500 (Fri, 21 Jan 2022)
EllapsedTime: 60.7 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL hermes
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'hermes' ...
** using staged installation
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'filter' in package 'hermes'
** help
Loading required namespace: hermes
*** installing help indices
  converting help for package 'hermes'
    finding HTML links ... done
    GeneSpec                                html  
    HermesData-class                        html  
    all_na                                  html  
    annotation                              html  
    assertion_arguments                     html  
    assertions                              html  
    calc_cor                                html  
    calc_pca                                html  
    cat_with_newline                        html  
    cbind                                   html  
    check_proportion                        html  
    colMeanZscores                          html  
    colPrinComp1                            html  
    col_data_with_genes                     html  
    connect_biomart                         html  
    control_normalize                       html  
    control_quality                         html  
    correlate                               html  
    counts                                  html  
    cut_quantile                            html  
    df_cols_to_factor                       html  
    diff_expression                         html  
    draw_barplot                            html  
    draw_boxplot                            html  
    draw_genes_barplot                      html  
    draw_libsize_densities                  html  
    draw_libsize_hist                       html  
    draw_libsize_qq                         html  
    draw_nonzero_boxplot                    html  
    draw_scatterplot                        html  
    expression_set                          html  
    extra_data_names                        html  
    filter                                  html  
    gene_spec                               html  
    genes                                   html  
    h_all_duplicated                        html  
    h_df_factors_with_explicit_na           html  
    h_diff_expr_deseq2                      html  
    h_diff_expr_voom                        html  
    h_ensembl_to_entrez_ids                 html  
    h_get_annotation_biomart                html  
    h_get_granges_by_id                     html  
    h_get_size_biomart                      html  
    h_has_req_annotations                   html  
    h_map_pos                               html  
    h_parens                                html  
    h_pca_df_r2_matrix                      html  
    h_pca_var_rsquared                      html  
    h_short_list                            html  
    h_strip_prefix                          html  
    h_unique_labels                         html  
    hermes-package                          html  
    hermes_data                             html  
    inner_join_cdisc                        html  
    isEmpty                                 html  
    lapply                                  html  
    metadata                                html  
    multi_assay_experiment                  html  
    normalize                               html  
    pca_cor_samplevar                       html  
    pipe                                    html  
    plot_all                                html  
    prefix                                  html  
    quality_flags                           html  
    query                                   html  
    rbind                                   html  
    rename                                  html  
    samples                                 html  
    set_tech_failure                        html  
    show                                    html  
    subset                                  html  
    summarized_experiment                   html  
    summary                                 html  
    top_genes                               html  
    validate                                html  
    wrap_in_mae                             html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (hermes)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'FoldGO' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'SeqGSEA' is missing or broken
 done