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This page was generated on 2024-02-22 12:48:38 -0500 (Thu, 22 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4657
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4397
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 885/2244HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gpls 1.75.0  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2024-02-21 14:10:10 -0500 (Wed, 21 Feb 2024)
git_url: https://git.bioconductor.org/packages/gpls
git_branch: devel
git_last_commit: 69a0deb
git_last_commit_date: 2023-10-24 09:32:24 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped

BUILD results for gpls on palomino3


To the developers/maintainers of the gpls package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gpls.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gpls
Version: 1.75.0
Command: chmod a+r gpls -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gpls
StartedAt: 2024-02-21 19:57:47 -0500 (Wed, 21 Feb 2024)
EndedAt: 2024-02-21 19:57:59 -0500 (Wed, 21 Feb 2024)
EllapsedTime: 12.5 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   chmod a+r gpls -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data gpls
###
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* checking for file 'gpls/DESCRIPTION' ... OK
* preparing 'gpls':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'gpls.Rnw' using Sweave
Warning in model.response(mf, "numeric") :
  using type = "numeric" with a factor response will be ignored
Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "gpls.tex" ' had status 1033
Error: processing vignette 'gpls.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'gpls.pdf' for vignette with name 'gpls' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\RtmpkFG5jW\Rbuild38145b01dfd\gpls\vignettes': 'gpls.Rnw' (5266 bytes), 'gpls.bib' (1611 bytes), 'gpls.tex' (8628 bytes)
--- failed re-building 'gpls.Rnw'

SUMMARY: processing the following file failed:
  'gpls.Rnw'

Error: Vignette re-building failed.
Execution halted