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This page was generated on 2022-06-24 11:06:32 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for girafe on palomino4


To the developers/maintainers of the girafe package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/girafe.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 796/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
girafe 1.49.0  (landing page)
J. Toedling
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/girafe
git_branch: master
git_last_commit: 9a25e4d
git_last_commit_date: 2022-04-26 11:04:31 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino4Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.2.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: girafe
Version: 1.49.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/girafe_1.49.0.tar.gz && rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=girafe.buildbin-libdir girafe_1.49.0.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL girafe_1.49.0.zip && rm girafe_1.49.0.tar.gz girafe_1.49.0.zip
StartedAt: 2022-06-23 16:19:13 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 16:20:07 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 53.3 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.16/bioc/src/contrib/girafe_1.49.0.tar.gz && rm -rf girafe.buildbin-libdir && mkdir girafe.buildbin-libdir && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=girafe.buildbin-libdir girafe_1.49.0.tar.gz && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD INSTALL girafe_1.49.0.zip && rm girafe_1.49.0.tar.gz girafe_1.49.0.zip
###
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##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
100 1059k  100 1059k    0     0  8686k      0 --:--:-- --:--:-- --:--:-- 8756k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'girafe' ...
** using staged installation
** libs
g++ -std=gnu++11  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c coverage.cpp -o coverage.o
gcc  -I"F:/biocbuild/bbs-3.16-bioc/R/include" -DNDEBUG     -I"C:/rtools42/x86_64-w64-mingw32.static.posix/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign  -c girafe_init.c -o girafe_init.o
g++ -std=gnu++11 -shared -s -static-libgcc -o girafe.dll tmp.def coverage.o girafe_init.o -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib/x64 -LC:/rtools42/x86_64-w64-mingw32.static.posix/lib -LF:/biocbuild/bbs-3.16-bioc/R/bin/x64 -lR
installing to F:/biocbuild/bbs-3.16-bioc/meat/girafe.buildbin-libdir/00LOCK-girafe/00new/girafe/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
Creating a generic function for 'sample' from package 'base' in package 'girafe'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
** testing if installed package can be loaded from final location
No methods found in package 'IRanges' for requests: 'score', 'score<-', 'sort' when loading 'girafe'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'girafe' as girafe_1.49.0.zip
* DONE (girafe)
* installing to library 'F:/biocbuild/bbs-3.16-bioc/R/library'
package 'girafe' successfully unpacked and MD5 sums checked