############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD build --keep-empty-dirs --no-resave-data ggbio ### ############################################################################## ############################################################################## * checking for file ‘ggbio/DESCRIPTION’ ... OK * preparing ‘ggbio’: * checking DESCRIPTION meta-information ... OK * installing the package to build vignettes * creating vignettes ... ERROR --- re-building ‘ggbio.Rnw’ using Sweave --- finished re-building ‘ggbio.Rnw’ cp realvignettes/*.Rnw . /Library/Frameworks/R.framework/Resources/bin/Rscript -e "library(knitr); knit2pdf('ggbio.Rnw')" processing file: ggbio.Rnw 1/125 2/125 [style-knitr] 3/125 4/125 [setup] 5/125 6/125 [citation] 7/125 8/125 [unnamed-chunk-1] 9/125 10/125 [unnamed-chunk-2] 11/125 12/125 [unnamed-chunk-3] 13/125 14/125 [unnamed-chunk-4] 15/125 16/125 [unnamed-chunk-5] 17/125 18/125 [unnamed-chunk-6] 19/125 20/125 [unnamed-chunk-7] 21/125 22/125 [unnamed-chunk-8] 23/125 24/125 [unnamed-chunk-9] 25/125 26/125 [unnamed-chunk-10] 27/125 28/125 [unnamed-chunk-11] 29/125 30/125 [unnamed-chunk-12] 31/125 32/125 [unnamed-chunk-13] 33/125 34/125 [unnamed-chunk-14] 35/125 36/125 [unnamed-chunk-15] 37/125 38/125 [unnamed-chunk-16] 39/125 40/125 [unnamed-chunk-17] 41/125 42/125 [unnamed-chunk-18] 43/125 44/125 [unnamed-chunk-19] 45/125 46/125 [unnamed-chunk-20] 47/125 48/125 [unnamed-chunk-21] 49/125 50/125 [unnamed-chunk-22] 51/125 52/125 [unnamed-chunk-23] 53/125 54/125 [unnamed-chunk-24] 55/125 56/125 [unnamed-chunk-25] 57/125 58/125 [unnamed-chunk-26] 59/125 60/125 [processing] 61/125 62/125 [unnamed-chunk-27] 63/125 64/125 [unnamed-chunk-28] 65/125 66/125 [unnamed-chunk-29] 67/125 68/125 [lower-mut-track] 69/125 70/125 [unnamed-chunk-30] 71/125 72/125 [subset-crc-1] 73/125 74/125 [lower-point-track] 75/125 76/125 [lower-link-track] 77/125 78/125 [unnamed-chunk-31] 79/125 80/125 [arrangement] 81/125 82/125 [simple-wrapper] 83/125 84/125 [simul_snp] 85/125 86/125 [line] 87/125 88/125 [morecolor2] 89/125 90/125 [unnamed-chunk-32] 91/125 92/125 [unnamed-chunk-33] 93/125 94/125 [unnamed-chunk-34] 95/125 96/125 [unnamed-chunk-35] 97/125 98/125 [unnamed-chunk-36] 99/125 100/125 [load-RNAediting] 101/125 102/125 [load-RNAediting-color] 103/125 104/125 [unnamed-chunk-37] 105/125 106/125 [unnamed-chunk-38] 107/125 108/125 [unnamed-chunk-39] 109/125 110/125 [edit-space] 111/125 112/125 [unnamed-chunk-40] 113/125 114/125 [unnamed-chunk-41] 115/125 116/125 [unnamed-chunk-42] 117/125 118/125 [unnamed-chunk-43] 119/125 120/125 [unnamed-chunk-44] 121/125 122/125 [unnamed-chunk-45] 123/125 124/125 [session-info] 125/125 output file: ggbio.tex ! Package xcolor Error: Undefined color `fgcolor'. Error: LaTeX failed to compile ggbio.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See ggbio.log for more info. Execution halted make: *** [ggbio.pdf] Error 1 Error in tools::buildVignettes(dir = ".", tangle = TRUE) : running 'make' failed Execution halted