##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/R/R-beta-2024-04-15_r86425/bin/R CMD build --keep-empty-dirs --no-resave-data geva
###
##############################################################################
##############################################################################


* checking for file ‘geva/DESCRIPTION’ ... OK
* preparing ‘geva’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘geva.Rmd’ using rmarkdown
Warning in Sys.setlocale("LC_TIME", "English_United States") :
  OS reports request to set locale to "English_United States" cannot be honored
! Missing $ inserted.
<inserted text> 
                $
l.412 ...e is applied using a threshold of (\alpha
                                                   \textless{} 

Try to find the following text in /home/biocbuild/tmp/Rtmpv3s2U9/Rbuildfdc6dcf958f/geva/vignettes/geva.Rmd:
  ...e is applied using a threshold of (\alpha 

You may need to add $ $ around a certain inline R expression `r ` in /home/biocbuild/tmp/Rtmpv3s2U9/Rbuildfdc6dcf958f/geva/vignettes/geva.Rmd (see the above hint). See https://github.com/rstudio/rmarkdown/issues/385 for more info.
Error: processing vignette 'geva.Rmd' failed with diagnostics:
LaTeX failed to compile /home/biocbuild/tmp/Rtmpv3s2U9/Rbuildfdc6dcf958f/geva/vignettes/geva.tex. See https://yihui.org/tinytex/r/#debugging for debugging tips. See geva.log for more info.
--- failed re-building ‘geva.Rmd’

SUMMARY: processing the following file failed:
  ‘geva.Rmd’

Error: Vignette re-building failed.
Execution halted