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This page was generated on 2022-01-19 11:07:47 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for genomation on riesling1


To the developers/maintainers of the genomation package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/genomation.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 741/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
genomation 1.27.1  (landing page)
Altuna Akalin , Vedran Franke
Snapshot Date: 2022-01-18 13:55:18 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/genomation
git_branch: master
git_last_commit: fe8db24
git_last_commit_date: 2021-11-18 16:59:51 -0500 (Thu, 18 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'Biostrings' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: genomation
Version: 1.27.1
Command: rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=genomation.buildbin-libdir genomation_1.27.1.tar.gz
StartedAt: 2022-01-18 20:54:15 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 20:55:37 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 81.7 seconds
RetCode: 0
Status:   OK  
PackageFile: genomation_1.27.1.zip
PackageFileSize: 3.477 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf genomation.buildbin-libdir && mkdir genomation.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=genomation.buildbin-libdir genomation_1.27.1.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'genomation' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG  -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c binSum.cpp -o binSum.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o genomation.dll tmp.def RcppExports.o binSum.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/genomation.buildbin-libdir/00LOCK-genomation/00new/genomation/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** help
*** installing help indices
  converting help for package 'genomation'
    finding HTML links ... done
    AnnotationByFeature-class               html  
    AnnotationByGeneParts-class             html  
    AnnotationByGeneParts-methods           html  
    Max_c                                   html  
    Mean_c                                  html  
    Median_c                                html  
    Min_c                                   html  
    Ops-ScoreMatrix-ScoreMatrix-method      html  
    Ops-ScoreMatrixList-ScoreMatrixList-method
                                            html  
    Ops-ScoreMatrixList-numeric-method      html  
    Ops-numeric-ScoreMatrixList-method      html  
    RandomEnrichment-class                  html  
    ScoreMatrix-class                       html  
    ScoreMatrix-methods                     html  
    ScoreMatrixBin-methods                  html  
    ScoreMatrixList-class                   html  
    ScoreMatrixList-methods                 html  
    Sum_c                                   html  
    annotatGrWithGeneParts                  html  
    annotateWithFeature-methods             html  
    annotateWithFeatureFlank-methods        html  
    annotateWithFeatures-methods            html  
    annotateWithGeneParts-methods           html  
    finding level-2 HTML links ... done

    bed12ToExons                            html  
    bed12ToIntrons                          html  
    binMatrix-methods                       html  
    binMax                                  html  
    binMean                                 html  
    binMedian                               html  
    binMin                                  html  
    binSum                                  html  
    binner                                  html  
    c.ScoreMatrix                           html  
    c.ScoreMatrixList                       html  
    cage                                    html  
    calculateOverlapSignificance-methods    html  
    checkBedValidity                        html  
    checkClass                              html  
    compressedAndUrl2temp                   html  
    constrainRanges                         html  
    convertBed2Exons-methods                html  
    convertBed2Introns-methods              html  
    convertBedDf-methods                    html  
    cpgi                                    html  
    detectUCSCheader                        html  
    distance2NearestFeature                 html  
    enrichmentMatrix-ScoreMatrix-method     html  
    enrichmentMatrix-ScoreMatrixList-ScoreMatrix-method
                                            html  
    enrichmentMatrix-ScoreMatrixList-method
                                            html  
    file.ext                                html  
    findFeatureComb-methods                 html  
    galpTo2Ranges                           html  
    genes                                   html  
    getColors                               html  
    getFeatsWithTargetsStats-methods        html  
    getFlanks-methods                       html  
    getMembers-methods                      html  
    getRandomEnrichment-methods             html  
    getTargetAnnotationStats-methods        html  
    gffToGRanges                            html  
    heatMatrix                              html  
    heatMeta                                html  
    heatTargetAnnotation-methods            html  
    intersectScoreMatrixList-methods        html  
    listSliceMax                            html  
    listSliceMean                           html  
    listSliceMedian                         html  
    listSliceMin                            html  
    listSliceSum                            html  
    multiHeatMatrix                         html  
    orderBy-methods                         html  
    patternMatrix-methods                   html  
    plotMeta                                html  
    plotTargetAnnotation-methods            html  
    promoters                               html  
    randomizeFeature-methods                html  
    read.zip                                html  
    readBam                                 html  
    readBed                                 html  
    readBigWig                              html  
    readBroadPeak                           html  
    readFeatureFlank-methods                html  
    readGeneric                             html  
    readNarrowPeak                          html  
    readTableFast                           html  
    readTranscriptFeatures-methods          html  
    scaleScoreMatrix-methods                html  
    scaleScoreMatrixList                    html  
    show-methods                            html  
    sub-ScoreMatrix-ANY-ANY-ANY-method      html  
    sub-ScoreMatrixList-ANY-ANY-ANY-method
                                            html  
    target.type                             html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package can be loaded from final location
Warning: replacing previous import 'Biostrings::pattern' by 'grid::pattern' when loading 'genomation'
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'genomation' as genomation_1.27.1.zip
* DONE (genomation)