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### Running command:
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###   chmod a+r genefilter -R && F:\biocbuild\bbs-3.20-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data genefilter
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* checking for file 'genefilter/DESCRIPTION' ... OK
* preparing 'genefilter':
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'howtogenefilter.Rmd' using rmarkdown
--- finished re-building 'howtogenefilter.Rmd'

--- re-building 'howtogenefinder.Rmd' using rmarkdown
[WARNING] Could not parse YAML metadata at line 22 column 1: :2:72: Unexpected '
  '
[WARNING] This document format requires a nonempty <title> element.
  Please specify either 'title' or 'pagetitle' in the metadata,
  e.g. by using --metadata pagetitle="..." on the command line.
  Falling back to 'howtogenefinder.knit'
--- finished re-building 'howtogenefinder.Rmd'

--- re-building 'independent_filtering_plots.Rnw' using knitr
texify: major issue: User/administrator updates are out-of-sync.
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "independent_filtering_plots.tex" --max-iterations=20 -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/tex/latex" -I "F:/biocbuild/bbs-3.20-bioc/R/share/texmf/bibtex/bst"' had status 1
Error: processing vignette 'independent_filtering_plots.Rnw' failed with diagnostics:
running 'texi2dvi' on 'independent_filtering_plots.tex' failed

LaTeX errors:
ettes/independent_filtering_plots.tex:78: Package xcolor Error: Undefined color
 `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:91: Package xcolor Error: Undefined color
 `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:111: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:178: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:191: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:202: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:225: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:247: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:256: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.
ettes/independent_filtering_plots.tex:272: Package xcolor Error: Undefined colo
r `fgcolor'.

See the xcolor package documentation for explanation.
Type  H <return>  for immediate help.

--- failed re-building 'independent_filtering_plots.Rnw'

SUMMARY: processing the following file failed:
  'independent_filtering_plots.Rnw'

Error: Vignette re-building failed.
Execution halted