Back to Multiple platform build/check report for BioC 3.15
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-18 11:07:22 -0500 (Tue, 18 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for geneXtendeR on riesling1


To the developers/maintainers of the geneXtendeR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/geneXtendeR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 737/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geneXtendeR 1.21.0  (landing page)
Bohdan Khomtchouk
Snapshot Date: 2022-01-17 13:55:17 -0500 (Mon, 17 Jan 2022)
git_url: https://git.bioconductor.org/packages/geneXtendeR
git_branch: master
git_last_commit: 63b6b7a
git_last_commit_date: 2021-10-26 12:30:30 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'rtracklayer' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: geneXtendeR
Version: 1.21.0
Command: rm -rf geneXtendeR.buildbin-libdir && mkdir geneXtendeR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=geneXtendeR.buildbin-libdir geneXtendeR_1.21.0.tar.gz
StartedAt: 2022-01-17 20:59:34 -0500 (Mon, 17 Jan 2022)
EndedAt: 2022-01-17 21:01:01 -0500 (Mon, 17 Jan 2022)
EllapsedTime: 87.2 seconds
RetCode: 0
Status:   OK  
PackageFile: geneXtendeR_1.21.0.zip
PackageFileSize: 8.527 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf geneXtendeR.buildbin-libdir && mkdir geneXtendeR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=geneXtendeR.buildbin-libdir geneXtendeR_1.21.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'geneXtendeR' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c annotate.c -o annotate.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c extract_number.c -o extract_number.o
extract_number.c: In function 'extractnumber':
extract_number.c:72:10: warning: variable 'n_1' set but not used [-Wunused-but-set-variable]
     long n_1;
          ^~~
extract_number.c:66:10: warning: variable 'j_1' set but not used [-Wunused-but-set-variable]
     long j_1;
          ^~~
extract_number.c:54:12: warning: variable 'pvcfcol5_5' set but not used [-Wunused-but-set-variable]
     char * pvcfcol5_5;
            ^~~~~~~~~~
extract_number.c:53:12: warning: variable 'pvcfcol4_4' set but not used [-Wunused-but-set-variable]
     char * pvcfcol4_4;
            ^~~~~~~~~~
extract_number.c:52:12: warning: variable 'pvcfcol3_3' set but not used [-Wunused-but-set-variable]
     char * pvcfcol3_3;
            ^~~~~~~~~~
extract_number.c:51:12: warning: variable 'pvcfcol2_2' set but not used [-Wunused-but-set-variable]
     char * pvcfcol2_2;
            ^~~~~~~~~~
extract_number.c:50:12: warning: variable 'pvcfcol1_1' set but not used [-Wunused-but-set-variable]
     char * pvcfcol1_1;
            ^~~~~~~~~~
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c extract_peaks.c -o extract_peaks.o
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o geneXtendeR.dll tmp.def annotate.o extract_number.o extract_peaks.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/geneXtendeR.buildbin-libdir/00LOCK-geneXtendeR/00new/geneXtendeR/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'geneXtendeR'
    finding HTML links ... done
    allPeakLengths                          html  
    annotate                                html  
    annotate_n                              html  
    barChart                                html  
    cumlinePlot                             html  
    diffGO                                  html  
    distinct                                html  
    dot-geneXtender                         html  
    gene_annotate                           html  
    gene_lookup                             html  
    hotspotPlot                             html  
    linePlot                                html  
    makeNetwork                             html  
    makeWordCloud                           html  
    meanPeakLength                          html  
    meanPeakLengthPlot                      html  
    peakLengthBoxplot                       html  
    peaksInput                              html  
    peaksMerge                              html  
    plotWordFreq                            html  
    rat                                     html  
    samplepeaksinput                        html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'geneXtendeR' as geneXtendeR_1.21.0.zip
* DONE (geneXtendeR)