Back to Multiple platform build/check report for BioC 3.15
ABCDEF[G]HIJKLMNOPQRSTUVWXYZ

This page was generated on 2022-01-28 11:07:51 -0500 (Fri, 28 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4167
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4062
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4004
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4121
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for geNetClassifier on riesling1


To the developers/maintainers of the geNetClassifier package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/geNetClassifier.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 735/2077HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
geNetClassifier 1.35.0  (landing page)
Sara Aibar
Snapshot Date: 2022-01-27 13:55:17 -0500 (Thu, 27 Jan 2022)
git_url: https://git.bioconductor.org/packages/geNetClassifier
git_branch: master
git_last_commit: fd508f1
git_last_commit_date: 2021-10-26 12:07:41 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'Biobase' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: geNetClassifier
Version: 1.35.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL geNetClassifier
StartedAt: 2022-01-27 15:33:00 -0500 (Thu, 27 Jan 2022)
EndedAt: 2022-01-27 15:34:01 -0500 (Thu, 27 Jan 2022)
EllapsedTime: 60.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL geNetClassifier
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'geNetClassifier' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'geNetClassifier'
    finding HTML links ... done
    GeNetClassifierReturn-class             html  
    GeneralizationError-class               html  
    GenesNetwork-class                      html  
    GenesRanking-class                      html  
    calculateGenesRanking                   html  
    externalValidation.probMatrix           html  
    externalValidation.stats                html  
    gClasses-methods                        html  
    geNetClassifier-package                 html  
    geNetClassifier                         html  
    finding level-2 HTML links ... done

    geneSymbols                             html  
    genesDetails-methods                    html  
    getEdges-methods                        html  
    getNodes-methods                        html  
    getNumEdges-methods                     html  
    getNumNodes-methods                     html  
    getRanking-methods                      html  
    getSubNetwork-methods                   html  
    getTopRanking-methods                   html  
    leukemiasClassifier                     html  
    network2txt                             html  
    numGenes-methods                        html  
    numSignificantGenes-methods             html  
    overview-methods                        html  
    plot.GeNetClassifierReturn              html  
    plot.GenesRanking                       html  
    plotAssignments                         html  
    plotDiscriminantPower                   html  
    plotExpressionProfiles                  html  
    plotNetwork                             html  
    queryGeNetClassifier                    html  
    querySummary                            html  
    setProperties-methods                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geNetClassifier)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'rols' is missing or broken
Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'timecourse' is missing or broken
 done