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This page was generated on 2022-01-19 11:07:44 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for gaga on riesling1


To the developers/maintainers of the gaga package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gaga.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 690/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gaga 2.41.0  (landing page)
David Rossell
Snapshot Date: 2022-01-18 13:55:18 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/gaga
git_branch: master
git_last_commit: 0794c21
git_last_commit_date: 2021-10-26 11:51:47 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'Biobase' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: gaga
Version: 2.41.0
Command: rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=gaga.buildbin-libdir gaga_2.41.0.tar.gz
StartedAt: 2022-01-18 20:53:01 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 20:54:14 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 72.6 seconds
RetCode: 0
Status:   OK  
PackageFile: gaga_2.41.0.zip
PackageFileSize: 681.9 KiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf gaga.buildbin-libdir && mkdir gaga.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=gaga.buildbin-libdir gaga_2.41.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'gaga' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c cseqdesma.c -o cseqdesma.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c cstat.c -o cstat.o
cstat.c:22:19: warning: 'css_c_sccs_id' defined but not used [-Wunused-const-variable=]
 static const char css_c_sccs_id[] = "@(#)$Workfile: rand.c$ $Revision: 5$";
                   ^~~~~~~~~~~~~
cstat.c:21:19: warning: 'vector_c_sccs_id' defined but not used [-Wunused-const-variable=]
 static const char vector_c_sccs_id[] = "%W%";
                   ^~~~~~~~~~~~~~~~
cstat.c:20:19: warning: 'nrutil_c_sccs_id' defined but not used [-Wunused-const-variable=]
 static const char nrutil_c_sccs_id[] = "%W%";
                   ^~~~~~~~~~~~~~~~
cstat.c:19:19: warning: 'mess_c_sccs_id' defined but not used [-Wunused-const-variable=]
 static const char mess_c_sccs_id[] = "%W%";
                   ^~~~~~~~~~~~~~
cstat.c:18:19: warning: 'interface_c_sccs_id' defined but not used [-Wunused-const-variable=]
 static const char interface_c_sccs_id[] = "%W%";
                   ^~~~~~~~~~~~~~~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o gaga.dll tmp.def cseqdesma.o cstat.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/gaga.buildbin-libdir/00LOCK-gaga/00new/gaga/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'gaga'
    finding HTML links ... done
    buildPatterns                           html  
    checkfit                                html  
    classpred                               html  
    dcgamma                                 html  
    findgenes                               html  
    fitGG                                   html  
    forwsimDiffExpr                         html  
    geneclus                                html  
    getpar                                  html  
    parest                                  html  
    plotForwSim                             html  
    posmeansGG                              html  
    powclasspred                            html  
    powfindgenes                            html  
    print.gagaclus                          html  
    print.gagafit                           html  
    print.gagahyp                           html  
    seqBoundariesGrid                       html  
    simGG                                   html  
    simnewsamples                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'gaga' as gaga_2.41.0.zip
* DONE (gaga)