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This page was generated on 2024-07-24 11:42 -0400 (Wed, 24 Jul 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 22.04.3 LTS)x86_644.4.1 (2024-06-14) -- "Race for Your Life" 4688
palomino8Windows Server 2022 Datacenterx644.4.1 (2024-06-14 ucrt) -- "Race for Your Life" 4284
lconwaymacOS 12.7.1 Montereyx86_644.4.1 (2024-06-14) -- "Race for Your Life" 4455
kjohnson3macOS 13.6.5 Venturaarm644.4.1 (2024-06-14) -- "Race for Your Life" 4404
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 852/2248HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
gINTomics 1.1.0  (landing page)
Angelo Velle
Snapshot Date: 2024-07-23 14:00 -0400 (Tue, 23 Jul 2024)
git_url: https://git.bioconductor.org/packages/gINTomics
git_branch: devel
git_last_commit: c1c358f
git_last_commit_date: 2024-04-30 11:56:24 -0400 (Tue, 30 Apr 2024)
nebbiolo2Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  NO, package depends on 'OmnipathR' which is not available
palomino8Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'OmnipathR' which is not available
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  NO, package depends on 'OmnipathR' which is not available
kjohnson3macOS 13.6.5 Ventura / arm64  OK    OK    OK    OK  NO, package depends on 'OmnipathR' which is not available


INSTALL results for gINTomics on kjohnson3

To the developers/maintainers of the gINTomics package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/gINTomics.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: gINTomics
Version: 1.1.0
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gINTomics
StartedAt: 2024-07-23 15:27:53 -0400 (Tue, 23 Jul 2024)
EndedAt: 2024-07-23 15:28:20 -0400 (Tue, 23 Jul 2024)
EllapsedTime: 27.2 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL gINTomics
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library’
* installing *source* package ‘gINTomics’ ...
** using staged installation
** R
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:27:58] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Contains 1 files.
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:27:58] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Pandoc version: `3.1.12.3`.
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:27:58] [TRACE]   [OmnipathR] Cache locked: FALSE



** data
** inst
** byte-compile and prepare package for lazy loading
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:04] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Contains 1 files.
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:04] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Pandoc version: `3.1.12.3`.
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:04] [TRACE]   [OmnipathR] Cache locked: FALSE
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:11] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Contains 1 files.
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:11] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Pandoc version: `3.1.12.3`.
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:11] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package can be loaded from final location
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:18] [INFO]    [OmnipathR] Initialized cache: `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Running on a build server, wiping cache.
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Cache is at `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Contains 1 files.
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Cache is locked: FALSE.
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Reading JSON from `/Users/biocbuild/Library/Caches/OmnipathR/cache.json` (encoding: UTF-8).
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:18] [SUCCESS] [OmnipathR] Removing all cache contents from `/Users/biocbuild/Library/Caches/OmnipathR`.
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Pandoc version: `3.1.12.3`.
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/db/db_def.json` (encoding: UTF-8).
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/magic_bytes.json` (encoding: UTF-8).
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/urls.json` (encoding: UTF-8).
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Reading JSON from `/Library/Frameworks/R.framework/Versions/4.4-arm64/Resources/library/OmnipathR/internal/id_types.json` (encoding: UTF-8).
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] JSON validation successful: TRUE
[2024-07-23 15:28:18] [TRACE]   [OmnipathR] Cache locked: FALSE
** testing if installed package keeps a record of temporary installation path
* DONE (gINTomics)