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This page was generated on 2022-06-24 11:06:28 -0400 (Fri, 24 Jun 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo2Linux (Ubuntu 20.04.4 LTS)x86_644.2.0 Patched (2022-06-02 r82447) -- "Vigorous Calisthenics" 4331
palomino4Windows Server 2022 Datacenterx644.2.0 Patched (2022-06-02 r82447 ucrt) -- "Vigorous Calisthenics" 4136
lconwaymacOS 12.2.1 Montereyx86_644.2.0 Patched (2022-05-29 r82424) -- "Vigorous Calisthenics" 4147
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for flowUtils on palomino4


To the developers/maintainers of the flowUtils package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/flowUtils.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 689/2118HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
flowUtils 1.61.0  (landing page)
Josef Spidlen
Snapshot Date: 2022-06-23 14:00:04 -0400 (Thu, 23 Jun 2022)
git_url: https://git.bioconductor.org/packages/flowUtils
git_branch: master
git_last_commit: 0e22061
git_last_commit_date: 2022-04-26 10:58:59 -0400 (Tue, 26 Apr 2022)
nebbiolo2Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
palomino4Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
lconwaymacOS 12.2.1 Monterey / x86_64  OK    ERROR  skippedskipped

Summary

Package: flowUtils
Version: 1.61.0
Command: chmod a+r flowUtils -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data flowUtils
StartedAt: 2022-06-23 18:40:43 -0400 (Thu, 23 Jun 2022)
EndedAt: 2022-06-23 18:40:58 -0400 (Thu, 23 Jun 2022)
EllapsedTime: 15.1 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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###
### Running command:
###
###   chmod a+r flowUtils -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data flowUtils
###
##############################################################################
##############################################################################


* checking for file 'flowUtils/DESCRIPTION' ... OK
* preparing 'flowUtils':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'HowTo-flowUtils.Rnw' using Sweave
No methods found in package 'flowCore' for requests: 'action', 'assign', 'Data', 'gate', 'tree' when loading 'flowUtils'

Error: processing vignette 'HowTo-flowUtils.Rnw' failed with diagnostics:
 chunk 9 (label = ApplyGatingML1) 
Error in if (class(mySpill) != "matrix") mySpill <- parseMatrixFromString(mySpill,  : 
  the condition has length > 1

--- failed re-building 'HowTo-flowUtils.Rnw'

SUMMARY: processing the following file failed:
  'HowTo-flowUtils.Rnw'

Error: Vignette re-building failed.
Execution halted