This page was generated on 2022-06-24 11:06:26 -0400 (Fri, 24 Jun 2022).
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### Running command:
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### chmod a+r fgga -R && F:\biocbuild\bbs-3.16-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data fgga
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* checking for file 'fgga/DESCRIPTION' ... OK
* preparing 'fgga':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'fgga.Rmd' using rmarkdown
Loading required package: RBGL
Loading required package: graph
Loading required package: BiocGenerics
Attaching package: 'BiocGenerics'
The following objects are masked from 'package:stats':
IQR, mad, sd, var, xtabs
The following objects are masked from 'package:base':
Filter, Find, Map, Position, Reduce, anyDuplicated, append, as.data.frame, basename,
cbind, colnames, dirname, do.call, duplicated, eval, evalq, get, grep, grepl,
intersect, is.unsorted, lapply, mapply, match, mget, order, paste, pmax, pmax.int,
pmin, pmin.int, rank, rbind, rownames, sapply, setdiff, sort, table, tapply, union,
unique, unsplit, which.max, which.min
Loading required package: AnnotationDbi
Loading required package: stats4
Loading required package: Biobase
Welcome to Bioconductor
Vignettes contain introductory material; view with 'browseVignettes()'. To cite
Bioconductor, see 'citation("Biobase")', and for packages 'citation("pkgname")'.
Loading required package: IRanges
Loading required package: S4Vectors
Attaching package: 'S4Vectors'
The following objects are masked from 'package:base':
I, expand.grid, unname
Attaching package: 'IRanges'
The following object is masked from 'package:grDevices':
windows
Loading required package: Category
Loading required package: Matrix
Attaching package: 'Matrix'
The following object is masked from 'package:S4Vectors':
expand
Attaching package: 'GOstats'
The following object is masked from 'package:AnnotationDbi':
makeGOGraph
GO-term: GO:0000166
GO-term: GO:0003674
GO-term: GO:0003676
GO-term: GO:0003677
GO-term: GO:0003824
GO-term: GO:0004888
GO-term: GO:0005102
GO-term: GO:0005215
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GO-term: GO:0005515
GO-term: GO:0005524
GO-term: GO:0008144
GO-term: GO:0016740
GO-term: GO:0016787
GO-term: GO:0017076
GO-term: GO:0019899
GO-term: GO:0030554
GO-term: GO:0032553
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GO-term: GO:0035639
GO-term: GO:0036094
GO-term: GO:0038023
GO-term: GO:0042802
GO-term: GO:0043167
GO-term: GO:0043168
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GO-term: GO:0046872
GO-term: GO:0060089
GO-term: GO:0097159
GO-term: GO:0097367
GO-term: GO:0098772
GO-term: GO:0140096
GO-term: GO:0140110
GO-term: GO:1901265
GO-term: GO:1901363
Quitting from lines 250-279 (fgga.Rmd)
Error: processing vignette 'fgga.Rmd' failed with diagnostics:
there is no package called 'PerfMeas'
--- failed re-building 'fgga.Rmd'
SUMMARY: processing the following file failed:
'fgga.Rmd'
Error: Vignette re-building failed.
Execution halted