Back to Multiple platform build/check report for BioC 3.19:   simplified   long
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This page was generated on 2024-03-27 11:36:43 -0400 (Wed, 27 Mar 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4698
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-03-16 r86144 ucrt) -- "Unsuffered Consequences" 4436
lconwaymacOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences" 4461
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-03-19 r86153) -- "Unsuffered Consequences" 4376
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 701/2264HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fcScan 1.17.0  (landing page)
Pierre Khoueiry Abdullah El-Kurdi
Snapshot Date: 2024-03-26 14:00:18 -0400 (Tue, 26 Mar 2024)
git_url: https://git.bioconductor.org/packages/fcScan
git_branch: devel
git_last_commit: 55c627e
git_last_commit_date: 2023-10-24 11:15:44 -0400 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
lconwaymacOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

CHECK results for fcScan on nebbiolo1


To the developers/maintainers of the fcScan package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fcScan.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: fcScan
Version: 1.17.0
Command: /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings fcScan_1.17.0.tar.gz
StartedAt: 2024-03-26 22:26:27 -0400 (Tue, 26 Mar 2024)
EndedAt: 2024-03-26 22:31:35 -0400 (Tue, 26 Mar 2024)
EllapsedTime: 307.6 seconds
RetCode: 0
Status:   OK  
CheckDir: fcScan.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD check --install=check:fcScan.install-out.txt --library=/home/biocbuild/bbs-3.19-bioc/R/site-library --timings fcScan_1.17.0.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/home/biocbuild/bbs-3.19-bioc/meat/fcScan.Rcheck’
* using R Under development (unstable) (2024-03-18 r86148)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
    GNU Fortran (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0
* running under: Ubuntu 22.04.4 LTS
* using session charset: UTF-8
* checking for file ‘fcScan/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fcScan’ version ‘1.17.0’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘fcScan’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking loading without being on the library search path ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘runTests.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... OK
* checking PDF version of manual ... OK
* DONE

Status: OK


Installation output

fcScan.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /home/biocbuild/bbs-3.19-bioc/R/bin/R CMD INSTALL fcScan
###
##############################################################################
##############################################################################


* installing to library ‘/home/biocbuild/bbs-3.19-bioc/R/site-library’
* installing *source* package ‘fcScan’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fcScan)

Tests output

fcScan.Rcheck/tests/runTests.Rout


R Under development (unstable) (2024-03-18 r86148) -- "Unsuffered Consequences"
Copyright (C) 2024 The R Foundation for Statistical Computing
Platform: x86_64-pc-linux-gnu

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> BiocGenerics:::testPackage("fcScan")
Loading required package: GenomicRanges
Loading required package: stats4
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Loading required package: S4Vectors

Attaching package: 'S4Vectors'

The following object is masked from 'package:utils':

    findMatches

The following objects are masked from 'package:base':

    I, expand.grid, unname

Loading required package: IRanges
Loading required package: GenomeInfoDb
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.2975936 secs
Sites in condition do not match sites in data
3  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1029217 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09942651 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09971404 secs
17  entries loaded 
Running getCluster using 1 threads
No cluster found
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1072016 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09229183 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08896828 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0768261 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0694313 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0902276 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1270437 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06309915 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.05419254 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06064415 secs
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08431435 secs
10  entries loaded 
Running getCluster using 1 threads
No cluster found
10  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07275891 secs
16  entries loaded 
Running getCluster using 1 threads
Time difference of 0.08225083 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06585979 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06872654 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09349918 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09110785 secs
6  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07539415 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0711627 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07546425 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09464788 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1006982 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09552979 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1213217 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.0862658 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1116793 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09094167 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1795893 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1694458 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07819915 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09737396 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09062624 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.07698631 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.09581757 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06747007 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1089501 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.06882763 secs
17  entries loaded 
Running getCluster using 1 threads
Time difference of 0.1117616 secs


RUNIT TEST PROTOCOL -- Tue Mar 26 22:31:16 2024 
*********************************************** 
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 

 
1 Test Suite : 
fcScan RUnit Tests - 1 test function, 0 errors, 0 failures
Number of test functions: 1 
Number of errors: 0 
Number of failures: 0 
> 
> proc.time()
   user  system elapsed 
 16.831   1.204  18.339 

Example timings

fcScan.Rcheck/fcScan-Ex.timings

nameusersystemelapsed
getCluster0.3090.0080.335