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This page was generated on 2022-01-28 11:07:44 -0500 (Fri, 28 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4167
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4062
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4004
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4121
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

CHECK results for fastLiquidAssociation on riesling1


To the developers/maintainers of the fastLiquidAssociation package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/fastLiquidAssociation.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 624/2077HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
fastLiquidAssociation 1.31.0  (landing page)
Tina Gunderson
Snapshot Date: 2022-01-27 13:55:17 -0500 (Thu, 27 Jan 2022)
git_url: https://git.bioconductor.org/packages/fastLiquidAssociation
git_branch: master
git_last_commit: 1593f06
git_last_commit_date: 2021-10-26 12:13:36 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'LiquidAssociation' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: fastLiquidAssociation
Version: 1.31.0
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fastLiquidAssociation.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings fastLiquidAssociation_1.31.0.tar.gz
StartedAt: 2022-01-27 18:54:42 -0500 (Thu, 27 Jan 2022)
EndedAt: 2022-01-27 18:57:31 -0500 (Thu, 27 Jan 2022)
EllapsedTime: 169.6 seconds
RetCode: 0
Status:   WARNINGS  
CheckDir: fastLiquidAssociation.Rcheck
Warnings: 2

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD check --no-multiarch --install=check:fastLiquidAssociation.install-out.txt --library=D:\biocbuild\bbs-3.15-bioc\R\library --no-vignettes --timings fastLiquidAssociation_1.31.0.tar.gz
###
##############################################################################
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* using log directory 'D:/biocbuild/bbs-3.15-bioc/meat/fastLiquidAssociation.Rcheck'
* using R Under development (unstable) (2021-11-21 r81221)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'fastLiquidAssociation/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'fastLiquidAssociation' version '1.31.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'fastLiquidAssociation' can be installed ... WARNING
Found the following significant warnings:
  Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/fastLiquidAssociation/man/fastMLA-methods.Rd:59: missing link 'WGCNA'
See 'D:/biocbuild/bbs-3.15-bioc/meat/fastLiquidAssociation.Rcheck/00install.out' for details.
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... NOTE
Namespaces in Imports field not imported from:
  'impute' 'preprocessCore'
  All declared Imports should be used.
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... WARNING
Missing link or links in documentation object 'fastMLA-methods.Rd':
  'WGCNA'

See section 'Cross-references' in the 'Writing R Extensions' manual.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ... OK
Examples with CPU (user + system) or elapsed time > 5s
                              user system elapsed
fastLiquidAssociation-package 1.55   0.14   20.62
fastboots.GLA-methods         0.80   0.30   18.00
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 2 WARNINGs, 1 NOTE
See
  'D:/biocbuild/bbs-3.15-bioc/meat/fastLiquidAssociation.Rcheck/00check.log'
for details.



Installation output

fastLiquidAssociation.Rcheck/00install.out

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL fastLiquidAssociation
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'fastLiquidAssociation' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'fastLiquidAssociation'
    finding HTML links ... done
    fastLiquidAssociation-package           html  
    fastMLA-methods                         html  
    finding level-2 HTML links ... done

Rd warning: D:/biocbuild/bbs-3.15-bioc/meat/fastLiquidAssociation/man/fastMLA-methods.Rd:59: missing link 'WGCNA'
    fastboots.GLA-methods                   html  
    mass.CNM-methods                        html  
    testmat                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (fastLiquidAssociation)
Making 'packages.html' ... done

Tests output


Example timings

fastLiquidAssociation.Rcheck/fastLiquidAssociation-Ex.timings

nameusersystemelapsed
fastLiquidAssociation-package 1.55 0.1420.62
fastMLA-methods0.450.201.46
fastboots.GLA-methods 0.8 0.318.0
mass.CNM-methods0.900.221.74