Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-20 11:07:13 -0500 (Thu, 20 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4162
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4057
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3999
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4116
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for epialleleR on riesling1


To the developers/maintainers of the epialleleR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/epialleleR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 585/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
epialleleR 1.3.4  (landing page)
Oleksii Nikolaienko
Snapshot Date: 2022-01-19 13:55:26 -0500 (Wed, 19 Jan 2022)
git_url: https://git.bioconductor.org/packages/epialleleR
git_branch: master
git_last_commit: b40ff92
git_last_commit_date: 2022-01-11 06:34:50 -0500 (Tue, 11 Jan 2022)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    WARNINGS    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: epialleleR
Version: 1.3.4
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL epialleleR
StartedAt: 2022-01-19 16:03:17 -0500 (Wed, 19 Jan 2022)
EndedAt: 2022-01-19 16:05:18 -0500 (Wed, 19 Jan 2022)
EllapsedTime: 121.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL epialleleR
###
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'epialleleR' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c RcppExports.cpp -o RcppExports.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_char_to_context.cpp -o rcpp_char_to_context.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_cx_report.cpp -o rcpp_cx_report.o
rcpp_cx_report.cpp: In function 'Rcpp::DataFrame rcpp_cx_report(Rcpp::DataFrame&, Rcpp::LogicalVector&, std::__cxx11::string)':
rcpp_cx_report.cpp:117:18: warning: comparison of integer expressions of different signedness: 'Rcpp::traits::storage_type<13>::type' {aka 'int'} and 'unsigned int' [-Wsign-compare]
     if ((start[x]>max_pos) || (rname[x]!=map_val[0])) {                         // if current position is further downstream or another reference
rcpp_cx_report.cpp:133:20: warning: comparison of integer expressions of different signedness: 'unsigned int' and 'std::array<int, 16>::value_type' {aka 'int'} [-Wsign-compare]
     max_pos=max_pos<map_val[1]?map_val[1]:max_pos;                              // last position of C in cx_map
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/advanced_insert_int.hpp:28,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:32,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:30,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_cx_report.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp: In instantiation of 'typename boost::container::dtl::enable_if_memtransfer_copy_assignable<I, F, F>::type boost::container::move_backward(I, I, F) [with I = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; F = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; typename boost::container::dtl::enable_if_memtransfer_copy_assignable<I, F, F>::type = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*]':
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:2983:41:   required from 'void boost::container::vector<T, Allocator, Options>::priv_insert_forward_range_expand_forward(T*, boost::container::vector<T, Allocator, Options>::size_type, InsertionProxy, boost::move_detail::true_type) [with InsertionProxy = boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*, boost::container::try_emplace_t, const long long unsigned int&, std::array<int, 16>&>; T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int; boost::move_detail::true_type = boost::move_detail::integral_constant<bool, true>]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:2826:10:   required from 'boost::container::vector<T, Allocator, Options>::iterator boost::container::vector<T, Allocator, Options>::priv_insert_forward_range(const pointer&, boost::container::vector<T, Allocator, Options>::size_type, InsertionProxy) [with InsertionProxy = boost::container::dtl::insert_emplace_proxy<boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*, boost::container::try_emplace_t, const long long unsigned int&, std::array<int, 16>&>; T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::iterator = boost::container::vec_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*, false>; typename boost::container::allocator_traits<typename boost::container::real_allocator<T, A>::type>::pointer = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; boost::container::vector<T, Allocator, Options>::pointer = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:1866:87:   required from 'boost::container::vector<T, Allocator, Options>::iterator boost::container::vector<T, Allocator, Options>::emplace(boost::container::vector<T, Allocator, Options>::const_iterator, Args&& ...) [with Args = {boost::container::try_emplace_t, const long long unsigned int&, std::array<int, 16>&}; T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::iterator = boost::container::vec_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*, false>; typename boost::container::allocator_traits<typename boost::container::real_allocator<T, A>::type>::pointer = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; boost::container::vector<T, Allocator, Options>::const_iterator = boost::container::vec_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*, true>]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:1020:20:   required from 'std::pair<typename boost::container::dtl::select_container_type<Value, AllocatorOrContainer>::type::iterator, bool> boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::try_emplace(boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::const_iterator, KeyType&&, Args&& ...) [with KeyType = const long long unsigned int&; Args = {std::array<int, 16>&}; Value = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; KeyOfValue = boost::container::dtl::select1st<long long unsigned int>; Compare = std::less<long long unsigned int>; AllocatorOrContainer = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; typename boost::container::dtl::select_container_type<Value, AllocatorOrContainer>::type::iterator = boost::container::vec_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*, false>; boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::const_iterator = boost::container::vec_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*, true>]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:968:89:   required from 'boost::container::flat_map<Key, T, Compare, Allocator>::iterator boost::container::flat_map<Key, T, Compare, Allocator>::try_emplace(boost::container::flat_map<Key, T, Compare, Allocator>::const_iterator, const key_type&, Args&& ...) [with Args = {std::array<int, 16>&}; Key = long long unsigned int; T = std::array<int, 16>; Compare = std::less<long long unsigned int>; AllocatorOrContainer = void; boost::container::flat_map<Key, T, Compare, Allocator>::iterator = boost::container::vec_iterator<std::pair<long long unsigned int, std::array<int, 16> >*, false>; boost::container::flat_map<Key, T, Compare, Allocator>::const_iterator = boost::container::vec_iterator<std::pair<long long unsigned int, std::array<int, 16> >*, true>; boost::container::flat_map<Key, T, Compare, Allocator>::key_type = long long unsigned int]'
rcpp_cx_report.cpp:129:55:   required from here
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp:912:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'boost::movelib::detail::iterator_to_element_ptr<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>::element_type' {aka 'struct boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >'} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
       std::memmove((boost::movelib::iterator_to_raw_pointer)(r), (boost::movelib::iterator_to_raw_pointer)(f), sizeof(value_type)*n);
       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:29,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_cx_report.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/pair.hpp:218:8: note: 'boost::movelib::detail::iterator_to_element_ptr<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>::element_type' {aka 'struct boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >'} declared here
 struct pair
        ^~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/advanced_insert_int.hpp:28,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:32,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:30,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_cx_report.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp: In instantiation of 'F boost::container::dtl::memmove(I, I, F) [with I = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; F = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*]':
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp:325:23:   required from 'typename boost::container::dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type boost::container::uninitialized_move_alloc(Allocator&, I, I, F) [with Allocator = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; I = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; F = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; typename boost::container::dtl::enable_if_memtransfer_copy_constructible<I, F, F>::type = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp:1205:59:   required from 'void boost::container::uninitialized_move_and_insert_alloc(Allocator&, F, F, F, O, std::size_t, InsertionProxy) [with Allocator = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; F = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; O = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; InsertionProxy = boost::container::dtl::insert_range_proxy<boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>, boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; std::size_t = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:3008:10:   required from 'void boost::container::vector<T, Allocator, Options>::priv_insert_forward_range_new_allocation(T*, boost::container::vector<T, Allocator, Options>::size_type, T*, boost::container::vector<T, Allocator, Options>::size_type, InsertionProxy) [with InsertionProxy = boost::container::dtl::insert_range_proxy<boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>, boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:2610:7:   required from 'void boost::container::vector<T, Allocator, Options>::priv_move_to_new_buffer(boost::container::vector<T, Allocator, Options>::size_type, boost::container::version_1) [with T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int; boost::container::version_1 = boost::move_detail::integral_constant<unsigned int, 1>]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:1570:10:   required from 'void boost::container::vector<T, Allocator, Options>::reserve(boost::container::vector<T, Allocator, Options>::size_type) [with T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:380:4:   required from 'void boost::container::dtl::flat_tree_reserve(SequenceContainer&, typename SequenceContainer::size_type, boost::move_detail::true_) [with SequenceContainer = boost::container::vector<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >, boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, void>; typename SequenceContainer::size_type = long long unsigned int; boost::move_detail::true_ = boost::move_detail::bool_<true>]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:1393:26:   required from 'void boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::reserve(boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::size_type) [with Value = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; KeyOfValue = boost::container::dtl::select1st<long long unsigned int>; Compare = std::less<long long unsigned int>; AllocatorOrContainer = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::size_type = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:712:9:   required from 'void boost::container::flat_map<Key, T, Compare, Allocator>::reserve(boost::container::flat_map<Key, T, Compare, Allocator>::size_type) [with Key = long long unsigned int; T = std::array<int, 16>; Compare = std::less<long long unsigned int>; AllocatorOrContainer = void; boost::container::flat_map<Key, T, Compare, Allocator>::size_type = long long unsigned int]'
rcpp_cx_report.cpp:111:24:   required from here
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp:184:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'value_type' {aka 'struct boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >'} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
       std::memmove(dest_raw, beg_raw, sizeof(value_type)*n);
       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:29,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_cx_report.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/pair.hpp:218:8: note: 'value_type' {aka 'struct boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >'} declared here
 struct pair
        ^~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/advanced_insert_int.hpp:28,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:32,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:30,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_cx_report.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp: In instantiation of 'I boost::container::dtl::memmove_n_source(I, std::size_t, F) [with I = boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; F = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; std::size_t = long long unsigned int]':
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp:553:32:   required from 'typename boost::container::dtl::enable_if_memtransfer_copy_constructible<I, F, I>::type boost::container::uninitialized_copy_alloc_n_source(Allocator&, I, std::size_t, F) [with Allocator = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; I = boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; F = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; typename boost::container::dtl::enable_if_memtransfer_copy_constructible<I, F, I>::type = boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; std::size_t = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/advanced_insert_int.hpp:81:75:   required from 'void boost::container::dtl::insert_range_proxy<Allocator, FwdIt, Iterator>::uninitialized_copy_n_and_update(Allocator&, Iterator, std::size_t) [with Allocator = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; FwdIt = boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; Iterator = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; std::size_t = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp:1208:4:   required from 'void boost::container::uninitialized_move_and_insert_alloc(Allocator&, F, F, F, O, std::size_t, InsertionProxy) [with Allocator = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; F = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; O = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*; InsertionProxy = boost::container::dtl::insert_range_proxy<boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>, boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; std::size_t = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:3008:10:   required from 'void boost::container::vector<T, Allocator, Options>::priv_insert_forward_range_new_allocation(T*, boost::container::vector<T, Allocator, Options>::size_type, T*, boost::container::vector<T, Allocator, Options>::size_type, InsertionProxy) [with InsertionProxy = boost::container::dtl::insert_range_proxy<boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, boost::move_iterator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>, boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>; T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:2610:7:   required from 'void boost::container::vector<T, Allocator, Options>::priv_move_to_new_buffer(boost::container::vector<T, Allocator, Options>::size_type, boost::container::version_1) [with T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int; boost::container::version_1 = boost::move_detail::integral_constant<unsigned int, 1>]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/vector.hpp:1570:10:   required from 'void boost::container::vector<T, Allocator, Options>::reserve(boost::container::vector<T, Allocator, Options>::size_type) [with T = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; A = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; Options = void; boost::container::vector<T, Allocator, Options>::size_type = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:380:4:   required from 'void boost::container::dtl::flat_tree_reserve(SequenceContainer&, typename SequenceContainer::size_type, boost::move_detail::true_) [with SequenceContainer = boost::container::vector<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >, boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >, void>; typename SequenceContainer::size_type = long long unsigned int; boost::move_detail::true_ = boost::move_detail::bool_<true>]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:1393:26:   required from 'void boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::reserve(boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::size_type) [with Value = boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >; KeyOfValue = boost::container::dtl::select1st<long long unsigned int>; Compare = std::less<long long unsigned int>; AllocatorOrContainer = boost::container::new_allocator<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> > >; boost::container::dtl::flat_tree<Value, KeyOfValue, Compare, AllocatorOrContainer>::size_type = long long unsigned int]'
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:712:9:   required from 'void boost::container::flat_map<Key, T, Compare, Allocator>::reserve(boost::container::flat_map<Key, T, Compare, Allocator>::size_type) [with Key = long long unsigned int; T = std::array<int, 16>; Compare = std::less<long long unsigned int>; AllocatorOrContainer = void; boost::container::flat_map<Key, T, Compare, Allocator>::size_type = long long unsigned int]'
rcpp_cx_report.cpp:111:24:   required from here
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/copy_move_algo.hpp:214:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'boost::movelib::detail::iterator_to_element_ptr<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>::element_type' {aka 'struct boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >'} with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
       std::memmove(boost::movelib::iterator_to_raw_pointer(r), boost::movelib::iterator_to_raw_pointer(f), sizeof(value_type)*n);
       ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/flat_tree.hpp:29,
                 from D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/flat_map.hpp:29,
                 from rcpp_cx_report.cpp:3:
D:/biocbuild/bbs-3.15-bioc/R/library/BH/include/boost/container/detail/pair.hpp:218:8: note: 'boost::movelib::detail::iterator_to_element_ptr<boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >*>::element_type' {aka 'struct boost::container::dtl::pair<long long unsigned int, std::array<int, 16> >'} declared here
 struct pair
        ^~~~
rcpp_cx_report.cpp:109:16: warning: 'max_pos' may be used uninitialized in this function [-Wmaybe-uninitialized]
   unsigned int max_pos, idx_to_increase, max_freq_ctx, max_freq_idx, pass_x;
                ^~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_fep.cpp -o rcpp_fep.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_get_base_freqs.cpp -o rcpp_get_base_freqs.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_get_xm_beta.cpp -o rcpp_get_xm_beta.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_match_target.cpp -o rcpp_match_target.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_read_bam.cpp -o rcpp_read_bam.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++17 -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rcpp/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/BH/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.15-bioc/R/library/zlibbioc/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c rcpp_threshold_reads.cpp -o rcpp_threshold_reads.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o epialleleR.dll tmp.def RcppExports.o rcpp_char_to_context.o rcpp_cx_report.o rcpp_fep.o rcpp_get_base_freqs.o rcpp_get_xm_beta.o rcpp_match_target.o rcpp_read_bam.o rcpp_threshold_reads.o D:/biocbuild/bbs-3.15-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-epialleleR/00new/epialleleR/libs/x64
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'epialleleR'
    finding HTML links ... done
    generateBedEcdf                         html  
    finding level-2 HTML links ... done

    generateBedReport                       html  
    generateCytosineReport                  html  
    generateVcfReport                       html  
    preprocessBam                           html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (epialleleR)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'PAST' is missing or broken
 done