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This page was generated on 2022-12-02 11:05:50 -0500 (Fri, 02 Dec 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4210
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-11-30 r83393 ucrt) -- "Unsuffered Consequences" 4122
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4188
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for ensemblVEP on nebbiolo1


To the developers/maintainers of the ensemblVEP package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/ensemblVEP.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 604/2155HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
ensemblVEP 1.41.1  (landing page)
Bioconductor Package Maintainer
Snapshot Date: 2022-12-01 14:00:17 -0500 (Thu, 01 Dec 2022)
git_url: https://git.bioconductor.org/packages/ensemblVEP
git_branch: master
git_last_commit: af762fa
git_last_commit_date: 2022-11-28 21:19:59 -0500 (Mon, 28 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64... NOT SUPPORTED ...
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  NO, package depends on 'VariantAnnotation' which is not available

Summary

Package: ensemblVEP
Version: 1.41.1
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ensemblVEP
StartedAt: 2022-12-01 15:41:39 -0500 (Thu, 01 Dec 2022)
EndedAt: 2022-12-01 15:42:20 -0500 (Thu, 01 Dec 2022)
EllapsedTime: 41.4 seconds
RetCode: 0
Status:   OK  

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD INSTALL ensemblVEP
###
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* installing to library ‘/home/biocbuild/bbs-3.17-bioc/R/library’
* installing *source* package ‘ensemblVEP’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in system2(.getVepPath(), stdout = TRUE, stderr = TRUE) :
  running command ''/usr/local/ensembl-vep/vep' 2>&1' had status 2
** testing if installed package can be loaded from final location
Warning in system2(.getVepPath(), stdout = TRUE, stderr = TRUE) :
  running command ''/usr/local/ensembl-vep/vep' 2>&1' had status 2
** testing if installed package keeps a record of temporary installation path
* DONE (ensemblVEP)