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This page was generated on 2021-11-30 13:54:51 -0500 (Tue, 30 Nov 2021).

INSTALL results for edge on riesling1

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raw results

Package 561/2068HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
edge 2.27.0  (landing page)
John D. Storey , Andrew J. Bass
Snapshot Date: 2021-11-29 14:50:17 -0500 (Mon, 29 Nov 2021)
git_url: https://git.bioconductor.org/packages/edge
git_branch: master
git_last_commit: 64ba7eb
git_last_commit_date: 2021-10-26 12:20:40 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.3 LTS) / x86_64  OK    OK    WARNINGS  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    WARNINGS    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    WARNINGS    OK  UNNEEDED, same version is already published

Summary

Package: edge
Version: 2.27.0
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/edge_2.27.0.tar.gz && rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.27.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL edge_2.27.0.zip && rm edge_2.27.0.tar.gz edge_2.27.0.zip
StartedAt: 2021-11-29 18:26:06 -0500 (Mon, 29 Nov 2021)
EndedAt: 2021-11-29 18:29:09 -0500 (Mon, 29 Nov 2021)
EllapsedTime: 182.3 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.165/BBS/3.15/bioc/src/contrib/edge_2.27.0.tar.gz && rm -rf edge.buildbin-libdir && mkdir edge.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=edge.buildbin-libdir edge_2.27.0.tar.gz && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL edge_2.27.0.zip && rm edge_2.27.0.tar.gz edge_2.27.0.zip
###
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  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0     0    0     0    0     0      0      0 --:--:-- --:--:-- --:--:--     0
  6  658k    6 41639    0     0   267k      0  0:00:02 --:--:--  0:00:02  265k
100  658k  100  658k    0     0  2194k      0 --:--:-- --:--:-- --:--:-- 2187k
only one architecture so ignoring '--merge-multiarch'
* installing *source* package 'edge' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c edge-init.c -o edge-init.o
"C:/rtools40/mingw64/bin/"gcc  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"     -O2 -Wall  -std=gnu99 -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c edgeKLODP.c -o edgeKLODP.o
edgeKLODP.c: In function 'odpScoreCluster':
edgeKLODP.c:194:27: warning: 'middle' may be used uninitialized in this function [-Wmaybe-uninitialized]
   free((FREE_ARG) (v + nl - NR_END));
                   ~~~~~~~~^~~~~~~~~
edgeKLODP.c:11:19: note: 'middle' was declared here
   double *first, *middle;
                   ^~~~~~
C:/rtools40/mingw64/bin/gcc -shared -s -static-libgcc -o edge.dll tmp.def edge-init.o edgeKLODP.o -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/edge.buildbin-libdir/00LOCK-edge/00new/edge/libs/x64
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'edge'
    finding HTML links ... done
    apply_jackstraw                         html  
    finding level-2 HTML links ... done

    apply_qvalue                            html  
    apply_snm                               html  
    apply_sva                               html  
    betaCoef                                html  
    build_models                            html  
    build_study                             html  
    deFit-class                             html  
    deSet-class                             html  
    deSet                                   html  
    edge                                    html  
    endotoxin                               html  
    fitFull                                 html  
    fitNull                                 html  
    fit_models                              html  
    fullMatrix                              html  
    fullModel                               html  
    gibson                                  html  
    individual                              html  
    kidney                                  html  
    kl_clust                                html  
    lrt                                     html  
    nullMatrix                              html  
    nullModel                               html  
    odp                                     html  
    qvalueObj                               html  
    resFull                                 html  
    resNull                                 html  
    sType                                   html  
    show                                    html  
    summary                                 html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'edge' as edge_2.27.0.zip
* DONE (edge)
* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
package 'edge' successfully unpacked and MD5 sums checked