Eric J. Kort
| Snapshot Date: 2021-01-24 14:40:26 -0500 (Sun, 24 Jan 2021) |
| URL: https://git.bioconductor.org/packages/dualKS |
| Branch: master |
| Last Commit: e27f200 |
| Last Changed Date: 2020-10-27 10:55:06 -0500 (Tue, 27 Oct 2020) |
| Back to Multiple platform build/check report for BioC 3.13 |
|
This page was generated on 2021-01-25 12:39:06 -0500 (Mon, 25 Jan 2021).
| TO THE DEVELOPERS/MAINTAINERS OF THE dualKS PACKAGE: Please make sure to use the following settings in order to reproduce any error or warning you see on this page. |
| Package 512/1938 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||
| dualKS 1.51.0 Eric J. Kort
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | OK | | ||||||
| tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | OK | OK | | ||||||
| riesling1 | Windows Server 2019 Standard / x64 | OK | OK | [ OK ] | OK | |||||||
| machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | OK | OK | |
| Package: dualKS |
| Version: 1.51.0 |
| Command: D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:dualKS.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings dualKS_1.51.0.tar.gz |
| StartedAt: 2021-01-24 20:16:50 -0500 (Sun, 24 Jan 2021) |
| EndedAt: 2021-01-24 20:17:49 -0500 (Sun, 24 Jan 2021) |
| EllapsedTime: 58.9 seconds |
| RetCode: 0 |
| Status: OK |
| CheckDir: dualKS.Rcheck |
| Warnings: 0 |
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### Running command:
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### D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD check --force-multiarch --install=check:dualKS.install-out.txt --library=D:\biocbuild\bbs-3.13-bioc\R\library --no-vignettes --timings dualKS_1.51.0.tar.gz
###
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* using log directory 'D:/biocbuild/bbs-3.13-bioc/meat/dualKS.Rcheck'
* using R Under development (unstable) (2020-12-30 r79736)
* using platform: x86_64-w64-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'dualKS/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'dualKS' version '1.51.0'
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking whether package 'dualKS' can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking 'build' directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* loading checks for arch 'i386'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* loading checks for arch 'x64'
** checking whether the package can be loaded ... OK
** checking whether the package can be loaded with stated dependencies ... OK
** checking whether the package can be unloaded cleanly ... OK
** checking whether the namespace can be loaded with stated dependencies ... OK
** checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
dksPerm : gammaLL: no visible global function definition for 'dgamma'
dksPerm: no visible global function definition for 'var'
dksPerm: no visible global function definition for 'optim'
dksWeights : ag: no visible global function definition for 'aggregate'
plot,DKSPredicted-missing: no visible global function definition for
'rainbow'
Undefined global functions or variables:
aggregate dgamma optim rainbow var
Consider adding
importFrom("grDevices", "rainbow")
importFrom("stats", "aggregate", "dgamma", "optim", "var")
to your NAMESPACE file.
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of 'data' directory ... OK
* checking data for non-ASCII characters ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking files in 'vignettes' ... OK
* checking examples ...
** running examples for arch 'i386' ... OK
** running examples for arch 'x64' ... OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in 'inst/doc' ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE
Status: 1 NOTE
See
'D:/biocbuild/bbs-3.13-bioc/meat/dualKS.Rcheck/00check.log'
for details.
dualKS.Rcheck/00install.out
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###
### Running command:
###
### C:\cygwin\bin\curl.exe -O http://172.29.0.4/BBS/3.13/bioc/src/contrib/dualKS_1.51.0.tar.gz && rm -rf dualKS.buildbin-libdir && mkdir dualKS.buildbin-libdir && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=dualKS.buildbin-libdir dualKS_1.51.0.tar.gz && D:\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL dualKS_1.51.0.zip && rm dualKS_1.51.0.tar.gz dualKS_1.51.0.zip
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% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
100 161k 100 161k 0 0 10.4M 0 --:--:-- --:--:-- --:--:-- 10.4M
install for i386
* installing *source* package 'dualKS' ...
** using staged installation
** R
** data
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'dualKS'
finding HTML links ... done
KS html
REDIRECT:topic KS -> KS.html [ SUCCESS ]
class.DKSClassifier html
REDIRECT:topic class:DKSClassifier -> class.DKSClassifier.html [ FAIL ]
REDIRECT:topic DKSClassifier -> class.DKSClassifier.html [ SUCCESS ]
REDIRECT:topic DKSClassifier-class -> class.DKSClassifier.html [ SUCCESS ]
REDIRECT:file class.DKSClassifier.html -> class.DKSClassifier.html [ SUCCESS ]
class.DKSGeneScores html
REDIRECT:topic class:DKSGeneScores -> class.DKSGeneScores.html [ FAIL ]
REDIRECT:topic DKSGeneScores -> class.DKSGeneScores.html [ SUCCESS ]
REDIRECT:topic DKSGeneScores-class -> class.DKSGeneScores.html [ SUCCESS ]
REDIRECT:file class.DKSGeneScores.html -> class.DKSGeneScores.html [ SUCCESS ]
class.DKSGeneSet html
REDIRECT:topic class:DKSGeneSet -> class.DKSGeneSet.html [ FAIL ]
REDIRECT:topic DKSGeneSet -> class.DKSGeneSet.html [ SUCCESS ]
REDIRECT:topic DKSGeneSet-class -> class.DKSGeneSet.html [ SUCCESS ]
REDIRECT:file class.DKSGeneSet.html -> class.DKSGeneSet.html [ SUCCESS ]
class.DKSPredicted html
REDIRECT:topic class:DKSPredicted -> class.DKSPredicted.html [ FAIL ]
REDIRECT:topic DKSPredicted -> class.DKSPredicted.html [ SUCCESS ]
REDIRECT:topic DKSPredicted-class -> class.DKSPredicted.html [ SUCCESS ]
REDIRECT:topic plot,DKSPredicted-method -> class.DKSPredicted.html [ SUCCESS ]
REDIRECT:topic plot,DKSPredicted,missing-method -> class.DKSPredicted.html [ SUCCESS ]
REDIRECT:topic show,DKSPredicted-method -> class.DKSPredicted.html [ SUCCESS ]
REDIRECT:topic summary,DKSPredicted-method -> class.DKSPredicted.html [ SUCCESS ]
REDIRECT:file class.DKSPredicted.html -> class.DKSPredicted.html [ SUCCESS ]
dks html
REDIRECT:topic dks -> dks.html [ SUCCESS ]
REDIRECT:topic eset -> dks.html [ SUCCESS ]
REDIRECT:topic pv.f -> dks.html [ SUCCESS ]
REDIRECT:topic pvr.f -> dks.html [ SUCCESS ]
dksClassify html
REDIRECT:topic dksClassify -> dksClassify.html [ SUCCESS ]
dksCustomClass html
REDIRECT:topic dksCustomClass -> dksCustomClass.html [ SUCCESS ]
dksPerm html
REDIRECT:topic dksPerm -> dksPerm.html [ SUCCESS ]
dksSelectGenes html
REDIRECT:topic dksSelectGenes -> dksSelectGenes.html [ SUCCESS ]
dksTrain html
REDIRECT:topic dksTrain -> dksTrain.html [ SUCCESS ]
dksWeights html
REDIRECT:topic dksWeights -> dksWeights.html [ SUCCESS ]
dualKS-package html
REDIRECT:topic dualKS-package -> dualKS-package.html [ SUCCESS ]
REDIRECT:topic dualKS -> dualKS-package.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'dualKS' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'dualKS' as dualKS_1.51.0.zip
* DONE (dualKS)
* installing to library 'D:/biocbuild/bbs-3.13-bioc/R/library'
package 'dualKS' successfully unpacked and MD5 sums checked
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dualKS.Rcheck/examples_i386/dualKS-Ex.timings
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dualKS.Rcheck/examples_x64/dualKS-Ex.timings
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