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This page was generated on 2021-10-22 12:04:23 -0400 (Fri, 22 Oct 2021).

INSTALL results for diffHic on riesling1

To the developers/maintainers of the diffHic package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/diffHic.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 504/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
diffHic 1.25.1  (landing page)
Aaron Lun
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/diffHic
git_branch: master
git_last_commit: 8d7f009
git_last_commit_date: 2021-07-15 04:46:22 -0400 (Thu, 15 Jul 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: diffHic
Version: 1.25.1
Command: C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/diffHic_1.25.1.tar.gz && rm -rf diffHic.buildbin-libdir && mkdir diffHic.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffHic.buildbin-libdir diffHic_1.25.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL diffHic_1.25.1.zip && rm diffHic_1.25.1.tar.gz diffHic_1.25.1.zip
StartedAt: 2021-10-21 19:01:26 -0400 (Thu, 21 Oct 2021)
EndedAt: 2021-10-21 19:04:12 -0400 (Thu, 21 Oct 2021)
EllapsedTime: 166.4 seconds
RetCode: 0
Status:   OK  

Command output

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###
### Running command:
###
###   C:\cygwin\bin\curl.exe -O http://155.52.207.166/BBS/3.14/bioc/src/contrib/diffHic_1.25.1.tar.gz && rm -rf diffHic.buildbin-libdir && mkdir diffHic.buildbin-libdir && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=diffHic.buildbin-libdir diffHic_1.25.1.tar.gz && D:\biocbuild\bbs-3.14-bioc\R\bin\R.exe CMD INSTALL diffHic_1.25.1.zip && rm diffHic_1.25.1.tar.gz diffHic_1.25.1.zip
###
##############################################################################
##############################################################################


  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
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 38 1457k   38  568k    0     0  1906k      0 --:--:-- --:--:-- --:--:-- 1900k
100 1457k  100 1457k    0     0  3218k      0 --:--:-- --:--:-- --:--:-- 3211k

install for i386

* installing *source* package 'diffHic' ...
** using staged installation
** libs
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c binner.cpp -o binner.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c check_input.cpp -o check_input.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cluster_2d.cpp -o cluster_2d.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_background.cpp -o count_background.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_connect.cpp -o count_connect.o
count_connect.cpp: In function 'SEXPREC* count_connect(SEXP, SEXP)':
count_connect.cpp:57:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'const int' [-Wsign-compare]
     for (size_t odex=0; odex < ncombos; ++odex) {
                         ~~~~~^~~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_patch.cpp -o count_patch.o
count_patch.cpp: In function 'SEXPREC* count_patch(SEXP, SEXP, SEXP, SEXP, SEXP)':
count_patch.cpp:45:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'unsigned int'} and 'const int' [-Wsign-compare]
     for (size_t vecdex=0; vecdex<ncombos; ++vecdex) {
                           ~~~~~~^~~~~~~~
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c directionality.cpp -o directionality.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.cpp -o init.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c iterative_correction.cpp -o iterative_correction.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c neighbors.cpp -o neighbors.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pair_stats.cpp -o pair_stats.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c quadrant_bg.cpp -o quadrant_bg.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c report_hic_pairs.cpp -o report_hic_pairs.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c trended_filter.cpp -o trended_filter.o
"C:/rtools40/mingw32/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
C:/rtools40/mingw32/bin/g++ -shared -s -static-libgcc -o diffHic.dll tmp.def binner.o check_input.o cluster_2d.o count_background.o count_connect.o count_patch.o directionality.o init.o iterative_correction.o neighbors.o pair_stats.o quadrant_bg.o report_hic_pairs.o trended_filter.o utils.o D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/usrlib/i386/libhts.a -LC:/extsoft/lib/i386 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -lidn -LC:/extsoft/lib/i386 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/i386 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/diffHic.buildbin-libdir/00LOCK-diffHic/00new/diffHic/libs/i386
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'diffHic'
    finding HTML links ... done
    DNaseHiC                                html  
    annotatePairs                           html  
    finding level-2 HTML links ... done

    boxPairs                                html  
    clusterPairs                            html  
    compartmentalize                        html  
    connectCounts                           html  
    consolidatePairs                        html  
    correctedContact                        html  
    cutGenome                               html  
    diClusters                              html  
    diffHicUsersGuide                       html  
    domainDirections                        html  
    enrichedPairs                           html  
    extractPatch                            html  
    filterDiag                              html  
    filterPeaks                             html  
    filters                                 html  
    getArea                                 html  
    getPairData                             html  
    loadData                                html  
    marginCounts                            html  
    mergeCMs                                html  
    mergePairs                              html  
    neighborCounts                          html  
    normalizeCNV                            html  
    pairParam                               html  
    plotDI                                  html  
    plotPlaid                               html  
    preparePairs                            html  
    prunePairs                              html  
    readMTX2IntSet                          html  
    savePairs                               html  
    squareCounts                            html  
    totalCounts                             html  
** building package indices
** installing vignettes
   'diffHic.Rnw' 
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path

install for x64

* installing *source* package 'diffHic' ...
** libs
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c binner.cpp -o binner.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c check_input.cpp -o check_input.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c cluster_2d.cpp -o cluster_2d.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_background.cpp -o count_background.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_connect.cpp -o count_connect.o
count_connect.cpp: In function 'SEXPREC* count_connect(SEXP, SEXP)':
count_connect.cpp:57:30: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
     for (size_t odex=0; odex < ncombos; ++odex) {
                         ~~~~~^~~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c count_patch.cpp -o count_patch.o
count_patch.cpp: In function 'SEXPREC* count_patch(SEXP, SEXP, SEXP, SEXP, SEXP)':
count_patch.cpp:45:33: warning: comparison of integer expressions of different signedness: 'size_t' {aka 'long long unsigned int'} and 'const int' [-Wsign-compare]
     for (size_t vecdex=0; vecdex<ncombos; ++vecdex) {
                           ~~~~~~^~~~~~~~
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c directionality.cpp -o directionality.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c init.cpp -o init.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c iterative_correction.cpp -o iterative_correction.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c neighbors.cpp -o neighbors.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c pair_stats.cpp -o pair_stats.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c quadrant_bg.cpp -o quadrant_bg.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c report_hic_pairs.cpp -o report_hic_pairs.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c trended_filter.cpp -o trended_filter.o
"C:/rtools40/mingw64/bin/"g++  -std=gnu++11 -I"D:/biocbuild/bbs-3.14-bioc/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/zlibbioc/include' -I'D:/biocbuild/bbs-3.14-bioc/R/library/Rcpp/include'   -I"C:/extsoft/include"     -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign  -c utils.cpp -o utils.o
C:/rtools40/mingw64/bin/g++ -shared -s -static-libgcc -o diffHic.dll tmp.def binner.o check_input.o cluster_2d.o count_background.o count_connect.o count_patch.o directionality.o init.o iterative_correction.o neighbors.o pair_stats.o quadrant_bg.o report_hic_pairs.o trended_filter.o utils.o D:/biocbuild/bbs-3.14-bioc/R/library/Rhtslib/usrlib/x64/libhts.a -LC:/extsoft/lib/x64 -lcurl -lrtmp -lssl -lssh2 -lcrypto -lgdi32 -lz -lws2_32 -lwldap32 -lwinmm -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.14-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.14-bioc/meat/diffHic.buildbin-libdir/diffHic/libs/x64
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'diffHic' as diffHic_1.25.1.zip
* DONE (diffHic)
* installing to library 'D:/biocbuild/bbs-3.14-bioc/R/library'
package 'diffHic' successfully unpacked and MD5 sums checked