Back to Multiple platform build/check report for BioC 3.14
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This page was generated on 2021-10-22 12:04:55 -0400 (Fri, 22 Oct 2021).

CHECK results for debrowser on merida1

To the developers/maintainers of the debrowser package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/debrowser.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 457/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
debrowser 1.21.1  (landing page)
Alper Kucukural
Snapshot Date: 2021-10-21 14:50:08 -0400 (Thu, 21 Oct 2021)
git_url: https://git.bioconductor.org/packages/debrowser
git_branch: master
git_last_commit: 7496da1
git_last_commit_date: 2021-08-11 22:13:55 -0400 (Wed, 11 Aug 2021)
nebbiolo2Linux (Ubuntu 20.04.2 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  UNNEEDED, same version is already published
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: debrowser
Version: 1.21.1
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:debrowser.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings debrowser_1.21.1.tar.gz
StartedAt: 2021-10-22 02:47:02 -0400 (Fri, 22 Oct 2021)
EndedAt: 2021-10-22 02:55:40 -0400 (Fri, 22 Oct 2021)
EllapsedTime: 517.9 seconds
RetCode: 0
Status:   OK  
CheckDir: debrowser.Rcheck
Warnings: 0

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:debrowser.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings debrowser_1.21.1.tar.gz
###
##############################################################################
##############################################################################


* using log directory ‘/Users/biocbuild/bbs-3.14-bioc/meat/debrowser.Rcheck’
* using R version 4.1.1 Patched (2021-08-22 r80813)
* using platform: x86_64-apple-darwin17.0 (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘debrowser/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘debrowser’ version ‘1.21.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘debrowser’ can be installed ... OK
* checking installed package size ... OK
* checking package directory ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the namespace can be loaded with stated dependencies ... OK
* checking whether the namespace can be unloaded cleanly ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
checkCountData : <anonymous>: no visible binding for global variable
  ‘err’
debrowserdataload: no visible binding for global variable ‘demodata’
debrowserhistogram: no visible global function definition for ‘config’
getBarMainPlot: no visible global function definition for ‘config’
getBoxMainPlot: no visible global function definition for ‘config’
getDensityPlot: no visible binding for global variable ‘samples’
getDensityPlot: no visible global function definition for ‘config’
getGOPlots: no visible global function definition for ‘facet_grid’
getIQRPlot: no visible global function definition for ‘config’
mainScatterNew: no visible global function definition for ‘config’
plot_pca: no visible binding for global variable ‘x’
plot_pca: no visible binding for global variable ‘y’
plot_pca: no visible binding for global variable ‘samples’
plot_pca: no visible global function definition for ‘config’
runHeatmap: no visible global function definition for ‘config’
Undefined global functions or variables:
  config demodata err facet_grid samples x y
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ...
  Running ‘test-demo.R’
  Running ‘test-deseq.R’
  Running ‘test-null.R’
  Running ‘test-ui.R’
 OK
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes in ‘inst/doc’ ... OK
* checking running R code from vignettes ... SKIPPED
* checking re-building of vignette outputs ... SKIPPED
* checking PDF version of manual ... OK
* DONE

Status: 1 NOTE
See
  ‘/Users/biocbuild/bbs-3.14-bioc/meat/debrowser.Rcheck/00check.log’
for details.



Installation output

debrowser.Rcheck/00install.out

##############################################################################
##############################################################################
###
### Running command:
###
###   /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL debrowser
###
##############################################################################
##############################################################################


* installing to library ‘/Library/Frameworks/R.framework/Versions/4.1/Resources/library’
* installing *source* package ‘debrowser’ ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (debrowser)

Tests output

debrowser.Rcheck/tests/test-demo.Rout


R version 4.1.1 Patched (2021-08-22 r80813) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.21.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("demo data can be loaded", {
+     load(system.file("extdata", "demo", "demodata.Rda",
+         package = "debrowser"))
+     expect_true(is.data.frame(demodata))
+     expect_equal(demodata[29311, 2], 2)
+     expect_equal(demodata[29311, 5], 7.1)
+     expect_equal(demodata[29311, 6], 6)
+     expect_null(demodata[1, 7])
+ })
Test passed 😀
> 
> proc.time()
   user  system elapsed 
 19.170   1.091  20.245 

debrowser.Rcheck/tests/test-deseq.Rout


R version 4.1.1 Patched (2021-08-22 r80813) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.21.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> load(system.file("extdata", "demo", "demodata.Rda",
+     package = "debrowser"))
> columns <- c("exper_rep1", "exper_rep2", "exper_rep3",
+     "control_rep1", "control_rep2", "control_rep3")
> conds <- factor( c("Control", "Control", "Control",
+     "Treat", "Treat", "Treat") )
> data <- data.frame(demodata[, columns])
> 
> #Run DESeq2 with the following parameters
> params <- c("DESeq2", "parametric", F, "Wald", "None") 
> non_expressed_cutoff <- 10
> data <- subset(data, rowSums(data) > 10)
> test_that("Able to run DESeq2", {
+     deseqrun <- runDE(data, columns, conds, params)
+     expect_true(exists("deseqrun"))
+ })
Test passed 🎊
> 
> ##################################################
> deseqrun <- runDE(data, columns, conds, params)
estimating size factors
estimating dispersions
gene-wise dispersion estimates
mean-dispersion relationship
final dispersion estimates
fitting model and testing
> 
> de_res <- data.frame(deseqrun)
> norm_data <- getNormalizedMatrix(data[, columns])
> rdata <- cbind(rownames(de_res), norm_data[rownames(de_res), columns],
+                 log10(rowMeans(norm_data[rownames(de_res),
+                 paste(c("exper_rep1", "exper_rep2", "exper_rep3"))])
+                 + 0.1), log10( rowMeans( norm_data[ rownames( de_res ),
+                 paste(c("control_rep1", "control_rep2", "control_rep3"))])
+                 + 0.1), de_res[rownames(de_res),
+                 c("padj", "log2FoldChange")], 2 ^ de_res[rownames(de_res),
+                 "log2FoldChange"], -1 *
+                 log10(de_res[rownames(de_res), "padj"]))
> colnames(rdata) <- c("ID", columns, "Cond1", "Cond2", "padj",
+                 "log2FoldChange", "foldChange", "log10padj")
> rdata <- as.data.frame(rdata)
> rdata$padj[is.na(rdata$padj)] <- 1
> 
> padj_cutoff <- 0.01
> foldChange_cutoff <- 2
> 
> rdata$Legend <- character(nrow(rdata))
> rdata$Legend[rdata$log2FoldChange > log2(foldChange_cutoff) &
+         rdata$padj < padj_cutoff] <- "Up"
> rdata$Legend[rdata$log2FoldChange < log2(1 / foldChange_cutoff) &
+         rdata$padj < padj_cutoff] <- "Down"
> rdata$Legend[abs(rdata$log2FoldChange) <= 
+         log2(foldChange_cutoff)] <- "NS"
> rdata$Legend[is.null(rdata$log10padj)] <- "NA"
> rdata$Size <- character(nrow(rdata))
> rdata[, "Size"] <- "40"
> 
> dat <- rdata
> dat$M <- rdata$Cond1 - rdata$Cond2
> dat$A <- (rdata$Cond1 + rdata$Cond2) / 2
> 
> updown <- rdata[rdata$Legend=="Up" | rdata$Legend=="Down",columns]
> ##################################################
> 
> test_that("Check the QC plots", {
+     expect_silent( all2all(data) )
+ })
Test passed 😸
> 
> 
> proc.time()
   user  system elapsed 
 64.806   1.619  66.457 

debrowser.Rcheck/tests/test-null.Rout


R version 4.1.1 Patched (2021-08-22 r80813) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.21.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("passing no data returns NULL", {
+     expect_null(compareClust() )
+     expect_null(getGOPlots(NULL, NULL))
+     null_deseq <- runDE(NULL)
+     expect_null(null_deseq)
+     expect_null(plot_pca(NULL))
+ })
Test passed 🥳
> 
> proc.time()
   user  system elapsed 
 19.249   1.103  20.339 

debrowser.Rcheck/tests/test-ui.Rout


R version 4.1.1 Patched (2021-08-22 r80813) -- "Kick Things"
Copyright (C) 2021 The R Foundation for Statistical Computing
Platform: x86_64-apple-darwin17.0 (64-bit)

R is free software and comes with ABSOLUTELY NO WARRANTY.
You are welcome to redistribute it under certain conditions.
Type 'license()' or 'licence()' for distribution details.

R is a collaborative project with many contributors.
Type 'contributors()' for more information and
'citation()' on how to cite R or R packages in publications.

Type 'demo()' for some demos, 'help()' for on-line help, or
'help.start()' for an HTML browser interface to help.
Type 'q()' to quit R.

> require(shiny)
Loading required package: shiny
> library(debrowser)



##############################################################################
Pathview is an open source software package distributed under GNU General
Public License version 3 (GPLv3). Details of GPLv3 is available at
http://www.gnu.org/licenses/gpl-3.0.html. Particullary, users are required to
formally cite the original Pathview paper (not just mention it) in publications
or products. For details, do citation("pathview") within R.

The pathview downloads and uses KEGG data. Non-academic uses may require a KEGG
license agreement (details at http://www.kegg.jp/kegg/legal.html).
##############################################################################
DEBrowser v1.21.1  For help: https://debrowser.readthedocs.org/

If you use DEBrowser in published research, please cite:

Alper Kucukural, Onur Yukselen, Deniz M. Ozata, Melissa J. Moore, Manuel Garber
DEBrowser: Interactive Differential Expression Analysis and Visualization Tool for Count Data
BMC Genomics 2019 20:6

doi:0.1186/s12864-018-5362-x

> library(testthat)
> 
> test_that("able to create panel UI", {
+     expect_silent( QCPanel <- getQCPanel() )
+     expect_true(exists("QCPanel"))
+     expect_equal(QCPanel[[1]][[1]], "div")
+ 
+     expect_silent( downloads <- getDownloadSection() )
+     expect_true(exists("downloads"))
+     expect_equal(downloads[[1]][[1]], "div")
+ 
+     expect_silent( getMain <- getMainPanel() )
+     expect_true(exists("getMain"))
+     expect_equal(getMain[[1]][[1]], "div")
+ 
+     expect_silent( getStart <- getStartupMsg() )
+     expect_true(exists("getStart"))
+     expect_equal(getStart[[1]][[1]], "div")
+ 
+     expect_silent( getAfter <- getAfterLoadMsg() )
+     expect_true(exists("getAfter"))
+     expect_equal(getAfter[[1]][[1]], "div")
+ 
+     expect_silent(getGO <- getGoPanel() )
+     expect_true(exists("getGO"))
+     expect_equal(getGO[[1]][[1]], "div")
+ })
Test passed 🎊
> 
> proc.time()
   user  system elapsed 
 20.227   1.139  21.332 

Example timings

debrowser.Rcheck/debrowser-Ex.timings

nameusersystemelapsed
BoxMainPlotControlsUI0.0420.0070.049
IQRPlotControlsUI0.0020.0010.002
actionButtonDE0.0060.0000.007
addDataCols0.0000.0000.001
addID000
all2all0.2140.0040.218
all2allControlsUI0.0410.0030.045
applyFilters0.0010.0000.001
applyFiltersNew0.0000.0000.001
applyFiltersToMergedComparison000
barMainPlotControlsUI0.0020.0000.002
batchEffectUI0.0800.0080.088
batchMethod0.0020.0010.002
changeClusterOrder0.0000.0000.001
checkCountData000
checkMetaData000
clustFunParamsUI0.0000.0000.001
clusterData0.0000.0000.001
compareClust000
condSelectUI0.0070.0000.008
correctCombat0.0000.0000.001
correctHarman0.0010.0000.000
customColorsUI0.0100.0020.012
cutOffSelectionUI0.0050.0000.005
dataLCFUI0.0280.0020.031
dataLoadUI0.0230.0020.025
deServer0.0120.0020.013
deUI0.1790.0180.197
debrowserIQRplot0.0010.0000.001
debrowserall2all0.0010.0000.000
debrowserbarmainplot0.0000.0000.001
debrowserbatcheffect0.0000.0000.001
debrowserboxmainplot0.0010.0010.000
debrowsercondselect0.0000.0000.001
debrowserdataload0.0000.0010.001
debrowserdeanalysis000
debrowserdensityplot0.0000.0010.000
debrowserheatmap0.0010.0000.001
debrowserhistogram0.0010.0010.000
debrowserlowcountfilter0.0000.0000.001
debrowsermainplot0.0010.0000.001
debrowserpcaplot000
dendControlsUI0.0090.0020.011
densityPlotControlsUI0.0030.0000.003
distFunParamsUI000
drawKEGG000
drawPCAExplained000
fileTypes000
fileUploadBox0.0050.0010.005
generateTestData0.0010.0010.001
getAfterLoadMsg0.0010.0000.001
getAll2AllPlotUI000
getBSTableUI000
getBarMainPlot0.0000.0010.001
getBarMainPlotUI0.0000.0000.001
getBoxMainPlot0.0000.0010.001
getBoxMainPlotUI0.0010.0000.001
getColorShapeSelection0.0000.0000.001
getColors000
getCompSelection0.0030.0000.003
getCondMsg0.0010.0000.000
getConditionSelector000
getConditionSelectorFromMeta0.0010.0000.002
getCutOffSelection0.0030.0010.003
getDEAnalysisText0.0040.0010.004
getDEResultsUI0.0020.0000.002
getDataAssesmentText0.0030.0000.003
getDataForTables0.0010.0010.000
getDataPreparationText0.0020.0000.002
getDensityPlot0.0010.0010.001
getDensityPlotUI000
getDomains0.0000.0010.000
getDown0.0010.0000.001
getDownloadSection0.0450.0020.046
getEnrichDO0.0000.0010.001
getEnrichGO0.0010.0000.001
getEnrichKEGG0.0010.0000.001
getEntrezIds0.0010.0000.000
getEntrezTable000
getGOLeftMenu0.0170.0010.016
getGOPlots000
getGSEA0.0010.0000.000
getGeneList0.5900.0660.657
getGeneSetData000
getGoPanel0.0270.0030.029
getHeatmapUI0.0010.0000.001
getHelpButton0.0000.0000.001
getHideLegendOnOff0.0010.0000.002
getHistogramUI000
getIQRPlot0.0010.0000.000
getIQRPlotUI0.0010.0000.000
getIntroText0.0010.0000.001
getJSLine0.0030.0000.003
getKEGGModal0.0050.0000.004
getLeftMenu000
getLegendColors0.0010.0010.002
getLegendRadio0.0030.0000.003
getLegendSelect0.0030.0000.002
getLevelOrder000
getLoadingMsg0.0020.0010.003
getLogo0.0020.0000.002
getMainPanel0.0020.0000.002
getMainPlotUI000
getMainPlotsLeftMenu0.1030.0030.106
getMean0.0000.0000.001
getMergedComparison0.0010.0000.001
getMetaSelector0.0010.0000.001
getMethodDetails0.0010.0010.001
getMostVariedList000
getNormalizedMatrix0.0220.0020.023
getOrganism000
getOrganismBox0.0030.0000.003
getOrganismPathway0.0000.0000.001
getPCAPlotUI000
getPCAcontolUpdatesJS000
getPCAexplained2.7340.1212.857
getPCselection0.0010.0000.001
getPlotArea0.0010.0000.000
getProgramTitle000
getQAText0.0010.0000.001
getQCLeftMenu0.0010.0000.001
getQCPanel0.0030.0000.003
getSampleDetails0.0000.0000.001
getSampleNames0.0000.0010.000
getSamples000
getSearchData000
getSelHeat0.0000.0000.001
getSelectInputBox000
getSelectedCols0.0000.0010.000
getSelectedDatasetInput0.0000.0000.001
getShapeColor0.0000.0000.001
getStartPlotsMsg0.0030.0010.004
getStartupMsg0.0040.0000.004
getTabUpdateJS0.0000.0010.001
getTableDetails0.0000.0000.001
getTableModal0.0100.0010.011
getTableStyle0.0010.0000.000
getTextOnOff0.0030.0000.003
getUp000
getUpDown0.0000.0000.001
getVariationData0.0010.0000.000
get_conditions_given_selection0.0010.0010.000
heatmapControlsUI0.0460.0010.049
heatmapJScode000
heatmapServer0.0010.0000.001
heatmapUI0.0990.0040.103
hideObj0.0000.0000.001
histogramControlsUI0.0010.0000.000
installpack0.0010.0000.001
kmeansControlsUI0.0080.0000.007
lcfMetRadio0.0040.0000.004
loadpack0.0190.0280.047
mainPlotControlsUI0.0080.0000.009
mainScatterNew0.0010.0000.001
niceKmeans000
normalizationMethods0.0020.0000.002
palUI0.0020.0000.002
panel.cor0.0010.0000.002
panel.hist0.0010.0000.001
pcaPlotControlsUI0.0080.0000.008
plotData0.0010.0000.000
plotMarginsUI0.0080.0010.008
plotSizeMarginsUI0.0090.0000.008
plotSizeUI0.0030.0000.003
plotTypeUI0.0010.0000.000
plot_pca1.4000.0341.434
prepDEOutput000
prepDataContainer0.0000.0000.001
prepGroup0.0010.0000.001
prepHeatData0.0010.0000.000
prepPCADat000
push0.0000.0010.001
removeCols000
removeExtraCols0.0020.0000.002
round_vals0.0010.0000.001
runDE000
runDESeq20.0000.0000.001
runEdgeR0.0000.0000.001
runHeatmap0.0010.0000.001
runHeatmap20.0010.0000.001
runLimma0.0010.0000.001
run_pca1.2030.0301.235
selectConditions0.0010.0000.001
selectGroupInfo0.0000.0000.001
selectedInput000
sepRadio0.0040.0000.004
setBatch0.0010.0000.001
showObj000
startDEBrowser0.0010.0010.001
startHeatmap0.0000.0000.001
textareaInput0.0010.0000.001
togglePanels0.0010.0000.001