Back to Multiple platform build/check report for BioC 3.19: simplified long |
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This page was generated on 2024-03-04 11:39:04 -0500 (Mon, 04 Mar 2024).
Hostname | OS | Arch (*) | R version | Installed pkgs |
---|---|---|---|---|
nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4676 |
palomino3 | Windows Server 2022 Datacenter | x64 | R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" | 4414 |
merida1 | macOS 12.7.1 Monterey | x86_64 | R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" | 4441 |
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) | aarch64 | R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" | 4417 |
Click on any hostname to see more info about the system (e.g. compilers) (*) as reported by 'uname -p', except on Windows and Mac OS X |
Package 482/2251 | Hostname | OS / Arch | INSTALL | BUILD | CHECK | BUILD BIN | ||||||||
cyanoFilter 1.11.0 (landing page) Oluwafemi Olusoji
| nebbiolo1 | Linux (Ubuntu 22.04.3 LTS) / x86_64 | OK | OK | OK | |||||||||
palomino3 | Windows Server 2022 Datacenter / x64 | OK | OK | OK | OK | |||||||||
merida1 | macOS 12.7.1 Monterey / x86_64 | OK | OK | OK | OK | |||||||||
kunpeng2 | Linux (openEuler 22.03 LTS-SP1) / aarch64 | OK | OK | OK | ||||||||||
To the developers/maintainers of the cyanoFilter package: - Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cyanoFilter.git to reflect on this report. See Troubleshooting Build Report for more information. - Use the following Renviron settings to reproduce errors and warnings. - If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information. |
Package: cyanoFilter |
Version: 1.11.0 |
Command: /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.11.0.tar.gz |
StartedAt: 2024-03-02 02:30:33 -0500 (Sat, 02 Mar 2024) |
EndedAt: 2024-03-02 02:34:06 -0500 (Sat, 02 Mar 2024) |
EllapsedTime: 212.2 seconds |
RetCode: 0 |
Status: OK |
CheckDir: cyanoFilter.Rcheck |
Warnings: 0 |
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD check --install=check:cyanoFilter.install-out.txt --library=/Library/Frameworks/R.framework/Resources/library --no-vignettes --timings cyanoFilter_1.11.0.tar.gz ### ############################################################################## ############################################################################## * using log directory ‘/Users/biocbuild/bbs-3.19-bioc/meat/cyanoFilter.Rcheck’ * using R Under development (unstable) (2024-01-16 r85808) * using platform: x86_64-apple-darwin20 * R was compiled by Apple clang version 14.0.0 (clang-1400.0.29.202) GNU Fortran (GCC) 12.2.0 * running under: macOS Monterey 12.7.1 * using session charset: UTF-8 * using option ‘--no-vignettes’ * checking for file ‘cyanoFilter/DESCRIPTION’ ... OK * checking extension type ... Package * this is package ‘cyanoFilter’ version ‘1.11.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... OK * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘cyanoFilter’ can be installed ... OK * checking installed package size ... OK * checking package directory ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking R files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... OK * checking whether the package can be loaded with stated dependencies ... OK * checking whether the package can be unloaded cleanly ... OK * checking whether the namespace can be loaded with stated dependencies ... OK * checking whether the namespace can be unloaded cleanly ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... OK * checking Rd files ... OK * checking Rd metadata ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking files in ‘vignettes’ ... OK * checking examples ... OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed gateFunc 19.926 0.921 19.552 ggpairsDens 6.507 0.221 7.787 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking running R code from vignettes ... SKIPPED * checking re-building of vignette outputs ... SKIPPED * checking PDF version of manual ... OK * DONE Status: OK
cyanoFilter.Rcheck/00install.out
############################################################################## ############################################################################## ### ### Running command: ### ### /Library/Frameworks/R.framework/Resources/bin/R CMD INSTALL cyanoFilter ### ############################################################################## ############################################################################## * installing to library ‘/Library/Frameworks/R.framework/Versions/4.4-x86_64/Resources/library’ * installing *source* package ‘cyanoFilter’ ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (cyanoFilter)
cyanoFilter.Rcheck/cyanoFilter-Ex.timings
name | user | system | elapsed | |
MarginEvents | 1.662 | 0.114 | 2.062 | |
PhytoFilter | 1.487 | 0.135 | 1.873 | |
PhytopFilter | 1.435 | 0.118 | 1.810 | |
accTest | 0.864 | 0.058 | 1.083 | |
accuracy | 1.164 | 0.092 | 1.431 | |
cellmargin | 0.712 | 0.054 | 0.893 | |
clusterExtract | 2.021 | 0.093 | 2.478 | |
clusterExtractp | 2.219 | 0.090 | 2.790 | |
debrisNc | 0.735 | 0.097 | 0.972 | |
fullFlowframe-MarginEvents-method | 0.696 | 0.046 | 0.877 | |
fullFlowframe-PhytopFilter-method | 1.452 | 0.070 | 1.765 | |
fullFlowframe | 0.677 | 0.042 | 0.859 | |
gateFunc | 19.926 | 0.921 | 19.552 | |
ggpairsDens | 6.507 | 0.221 | 7.787 | |
ggplotDens | 1.080 | 0.057 | 1.336 | |
ggplotDens2 | 2.158 | 0.086 | 2.682 | |
goodfcs | 0.092 | 0.013 | 0.116 | |
is.DebrisFilter | 0.000 | 0.001 | 0.001 | |
is.MarginEvents | 0.001 | 0.000 | 0.001 | |
is.PhytopFilter | 0.000 | 0.001 | 0.001 | |
is.flowFrame | 0.000 | 0.000 | 0.001 | |
is.flowSet | 0.000 | 0.001 | 0.001 | |
lnTrans | 0.478 | 0.038 | 0.600 | |
newFlowframe | 0.510 | 0.207 | 0.875 | |
nona | 0.215 | 0.013 | 0.263 | |
noneg | 0.656 | 0.030 | 0.800 | |
oneDgate | 0.488 | 0.210 | 0.807 | |
pairsPlot | 2.826 | 0.248 | 3.475 | |
pigmentGate | 0.606 | 0.127 | 0.817 | |
reducedFlowframe-MarginEvents-method | 0.675 | 0.046 | 0.822 | |
reducedFlowframe | 0.684 | 0.043 | 0.809 | |
retain | 0.034 | 0.003 | 0.040 | |
rowNumbers | 0.478 | 0.130 | 0.688 | |
summaries-DebrisFilter-method | 0.664 | 0.048 | 0.821 | |
summaries-MarginEvents-method | 0.679 | 0.043 | 0.840 | |
summaries-PhytopFilter-method | 1.454 | 0.068 | 1.787 | |
summaries | 0.685 | 0.039 | 0.853 | |