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### Running command:
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###   /home/biocbuild/bbs-3.20-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data --md5 customCMPdb
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* checking for file ‘customCMPdb/DESCRIPTION’ ... OK
* preparing ‘customCMPdb’:
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘customCMPdb.Rmd’ using rmarkdown

		Information on package 'customCMPdb'

Description:

Package:                customCMPdb
Title:                  Customize and Query Compound Annotation
                        Database
Description:            This package serves as a query interface for
                        important community collections of small
                        molecules, while also allowing users to include
                        custom compound collections.
Version:                1.15.0
Authors@R:              c(person("Yuzhu", "Duan", role = c("aut",
                        "cre"), email = "yduan004@ucr.edu"),
                        person("Thomas", "Girke", role = "aut", email =
                        "thomas.girke@ucr.edu"))
Depends:                R (>= 4.0)
Imports:                AnnotationHub, RSQLite, XML, utils, ChemmineR,
                        methods, stats, rappdirs, BiocFileCache
Suggests:               knitr, rmarkdown, testthat, BiocStyle
License:                Artistic-2.0
biocViews:              Software, Cheminformatics,AnnotationHubSoftware
Encoding:               UTF-8
VignetteBuilder:        knitr
URL:                    https://github.com/yduan004/customCMPdb/
BugReports:             https://github.com/yduan004/customCMPdb/issues
RoxygenNote:            7.1.2
NeedsCompilation:       no
git_url:                https://git.bioconductor.org/packages/customCMPdb
git_branch:             devel
git_last_commit:        e3059d0
git_last_commit_date:   2024-04-30
Repository:             Bioconductor 3.20
Date/Publication:       2024-07-15
Author:                 Yuzhu Duan [aut, cre], Thomas Girke [aut]
Maintainer:             Yuzhu Duan <yduan004@ucr.edu>
Built:                  R 4.4.1; ; 2024-07-15 20:55:55 UTC; unix

Index:

addCustomAnnot          Add/Delete Custom Annotation
buildCMAPdb             Build CMAP Database
buildDrugAgeDB          Build DrugAge Annotation Database
customCMPdb-package     Customize and Query Compound Annotation
                        Database
dbxml2df                Convert drugbank database (xml file) into
                        dataframe.
df2SQLite               Store drugbank dataframe into an SQLite
                        database
loadAnnot               Load Compound Annotation Database
loadSDFwithName         Load Compound Structures from Four Resources
processDrugage          Process Source DrugAge Dataset
queryAnnotDB            Annotation Queries with Compound IDs


Quitting from lines 98-104 [sql] (customCMPdb.Rmd)
Error: processing vignette 'customCMPdb.Rmd' failed with diagnostics:
file is not a database
--- failed re-building ‘customCMPdb.Rmd’

SUMMARY: processing the following file failed:
  ‘customCMPdb.Rmd’

Error: Vignette re-building failed.
Execution halted