This page was generated on 2021-01-17 12:33:38 -0500 (Sun, 17 Jan 2021).
cummeRbund 2.33.0 Loyal A. Goff
Snapshot Date: 2021-01-16 14:40:27 -0500 (Sat, 16 Jan 2021) |
URL: https://git.bioconductor.org/packages/cummeRbund |
Branch: master |
Last Commit: 7d5cb76 |
Last Changed Date: 2020-10-27 10:43:08 -0500 (Tue, 27 Oct 2020) |
| malbec2 | Linux (Ubuntu 20.04.1 LTS) / x86_64 | OK | OK | WARNINGS | |  |
tokay2 | Windows Server 2012 R2 Standard / x64 | OK | OK | WARNINGS | [ OK ] |  |
riesling1 | Windows Server 2019 Standard / x64 | OK | OK | WARNINGS | OK | |
machv2 | macOS 10.14.6 Mojave / x86_64 | OK | OK | WARNINGS | OK |  |
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### Running command:
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### rm -rf cummeRbund.buildbin-libdir && mkdir cummeRbund.buildbin-libdir && C:\Users\biocbuild\bbs-3.13-bioc\R\bin\R.exe CMD INSTALL --merge-multiarch --build --library=cummeRbund.buildbin-libdir cummeRbund_2.33.0.tar.gz
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install for i386
* installing *source* package 'cummeRbund' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
converting help for package 'cummeRbund'
finding HTML links ... done
CuffData-class html
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REDIRECT:topic DB,CuffData-method -> CuffData-class.html [ SUCCESS ]
REDIRECT:topic makeRnk -> CuffData-class.html [ SUCCESS ]
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CuffDist-class html
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CuffFeature-class html
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CuffFeatureSet-class html
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CuffGene-class html
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REDIRECT:topic csPie -> CuffGene-class.html [ SUCCESS ]
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CuffGeneSet-class html
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CuffSet-class html
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REDIRECT:topic conditions -> CuffSet-class.html [ SUCCESS ]
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REDIRECT:topic [,CuffSet-method -> CuffSet-class.html [ SUCCESS ]
JSdist html
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JSdistFromP html
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JSdistVec html
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MAplot html
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PINK1 html
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QCplots html
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addFeatures html
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count html
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countMatrix html
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REDIRECT:topic repCountMatrix -> countMatrix.html [ SUCCESS ]
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REDIRECT:topic repCountMatrix,CuffFeatureSet-method -> countMatrix.html [ SUCCESS ]
csBoxplot html
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csCluster html
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csClusterPlot html
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csDendro html
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csDensity html
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csDistHeat html
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csHeatmap html
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csScatter html
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csSpecificity html
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csVolcano html
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cummeRbund-package html
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diffData html
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dimensionality html
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REDIRECT:topic MDSplot,CuffFeatureSet-method -> dimensionality.html [ SUCCESS ]
REDIRECT:topic PCAplot -> dimensionality.html [ SUCCESS ]
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dispersionPlot html
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distValues html
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exploratory html
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expressionBarplot html
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expressionPlot html
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featureNames html
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features html
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findGene html
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findSimilar html
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REDIRECT:topic findSimilar,CuffSet-method -> findSimilar.html [ SUCCESS ]
fpkm html
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REDIRECT:topic fpkm-methods -> fpkm.html [ SUCCESS ]
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fpkmMatrix html
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getFeatures html
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getGene html
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getGeneId html
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getGenes html
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getLevels html
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getRepLevels html
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getSig html
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getSigTable html
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makeprobs html
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makeprobsvec html
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readCufflinks html
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repFpkm html
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replicates html
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runInfo html
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sampleGeneSet html
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sampleIDs html
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samples html
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shannon.entropy html
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sigMatrix html
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REDIRECT:topic sigMatrix,CuffSet-method -> sigMatrix.html [ SUCCESS ]
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
install for x64
* installing *source* package 'cummeRbund' ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'cummeRbund' as cummeRbund_2.33.0.zip
* DONE (cummeRbund)