Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-21 11:07:17 -0500 (Fri, 21 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for cosmosR on riesling1


To the developers/maintainers of the cosmosR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/cosmosR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 406/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
cosmosR 1.3.0  (landing page)
Katharina Zirngibl
Snapshot Date: 2022-01-20 13:55:17 -0500 (Thu, 20 Jan 2022)
git_url: https://git.bioconductor.org/packages/cosmosR
git_branch: master
git_last_commit: 0360169
git_last_commit_date: 2021-10-26 13:09:43 -0500 (Tue, 26 Oct 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published

Summary

Package: cosmosR
Version: 1.3.0
Command: rm -rf cosmosR.buildbin-libdir && mkdir cosmosR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=cosmosR.buildbin-libdir cosmosR_1.3.0.tar.gz
StartedAt: 2022-01-20 20:48:03 -0500 (Thu, 20 Jan 2022)
EndedAt: 2022-01-20 20:49:04 -0500 (Thu, 20 Jan 2022)
EllapsedTime: 61.7 seconds
RetCode: 0
Status:   OK  
PackageFile: cosmosR_1.3.0.zip
PackageFileSize: 3.528 MiB

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   rm -rf cosmosR.buildbin-libdir && mkdir cosmosR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=cosmosR.buildbin-libdir cosmosR_1.3.0.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'cosmosR' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'cosmosR'
    finding HTML links ... done
    convert_ensembl_to_entrezid             html  
    convert_genesymbols_to_entrezid         html  
    cosmos_data                             html  
    default_CARNIVAL_options                html  
    display_node_neighboorhood              html  
    extract_nodes_for_ORA                   html  
    format_COSMOS_res                       html  
    gmt_to_dataframe                        html  
    load_tf_regulon_dorothea                html  
    load_tf_regulon_dorothea_omnipath       html  
    meta_network                            html  
    metabolite_to_pubchem                   html  
    omnipath_ptm                            html  
    prepare_metabolomics_data               html  
    preprocess_COSMOS_metabolism_to_signaling
                                            html  
    preprocess_COSMOS_signaling_to_metabolism
                                            html  
    print.cosmos_data                       html  
    run_COSMOS_metabolism_to_signaling      html  
    run_COSMOS_signaling_to_metabolism      html  
    toy_RNA                                 html  
    toy_metabolic_input                     html  
    toy_network                             html  
    toy_signaling_input                     html  
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'cosmosR' as cosmosR_1.3.0.zip
* DONE (cosmosR)