Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-22 11:07:00 -0500 (Sat, 22 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4163
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4058
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 4000
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4117
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for compEpiTools on riesling1


To the developers/maintainers of the compEpiTools package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/compEpiTools.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 379/2075HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
compEpiTools 1.29.2  (landing page)
Kamal Kishore
Snapshot Date: 2022-01-21 13:55:18 -0500 (Fri, 21 Jan 2022)
git_url: https://git.bioconductor.org/packages/compEpiTools
git_branch: master
git_last_commit: 20988a4
git_last_commit_date: 2021-11-20 23:28:21 -0500 (Sat, 20 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    ERROR  
riesling1Windows Server 2019 Standard / x64  OK    OK    NA    NA  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    ERROR    OK  
merida1macOS 10.14.6 Mojave / x86_64  OK    OK    ERROR    OK  

Summary

Package: compEpiTools
Version: 1.29.2
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL compEpiTools
StartedAt: 2022-01-21 16:14:42 -0500 (Fri, 21 Jan 2022)
EndedAt: 2022-01-21 16:15:30 -0500 (Fri, 21 Jan 2022)
EllapsedTime: 47.6 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
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###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL compEpiTools
###
##############################################################################
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* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'compEpiTools' ...
** using staged installation
** R
** inst
** byte-compile and prepare package for lazy loading

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools'
** help
*** installing help indices
  converting help for package 'compEpiTools'
    finding HTML links ... done
    GR2fasta-methods                        html  
    GRanges2ucsc-methods                    html  
    GRangesInPromoters-methods              html  
    GRannotate-methods                      html  
    GRannotateSimple                        html  
    GRbaseCoverage-methods                  html  
    GRcoverage-methods                      html  
    GRcoverageSummit-methods                html  
    GRenrichment-methods                    html  
    GRmidpoint-methods                      html  
    GRsetwidth                              html  
    TSS                                     html  
    compEpiTools-package                    html  
    countOverlapsInBins-methods             html  
    distanceFromTSS-methods                 html  
    enhancers                               html  
    findLncRNA                              html  
    getPromoterClass-methods                html  
    finding level-2 HTML links ... done

    heatmapData                             html  
    heatmapPlot                             html  
    makeGtfFromDb                           html  
    matchEnhancers                          html  
    overlapOfGRanges-methods                html  
    palette2d                               html  
    plotStallingIndex                       html  
    simplifyGOterms                         html  
    stallingIndex                           html  
    topGOres                                html  
    ucsc2GRanges                            html  
    unionMaxScore-methods                   html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools'
Warning: Package 'compEpiTools' is deprecated and will be removed from
  Bioconductor version 3.16
** testing if installed package can be loaded from final location

groupGOTerms: 	GOBPTerm, GOMFTerm, GOCCTerm environments built.
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'methylPipe'
No methods found in package 'BiocGenerics' for requests: 'clusterApplyLB', 'clusterEvalQ' when loading 'compEpiTools'
Warning: Package 'compEpiTools' is deprecated and will be removed from
  Bioconductor version 3.16
** testing if installed package keeps a record of temporary installation path
* DONE (compEpiTools)
Making 'packages.html' ... done