Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-19 11:07:26 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

INSTALL results for coMET on riesling1


To the developers/maintainers of the coMET package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/coMET.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 374/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
coMET 1.27.1  (landing page)
Tiphaine Martin
Snapshot Date: 2022-01-18 13:55:18 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/coMET
git_branch: master
git_last_commit: 5913d6e
git_last_commit_date: 2021-11-17 16:01:48 -0500 (Wed, 17 Nov 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    ERROR  skipped
riesling1Windows Server 2019 Standard / x64  OK    ERROR  skippedskipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: coMET
Version: 1.27.1
Command: D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL coMET
StartedAt: 2022-01-18 16:07:55 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 16:08:48 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 52.8 seconds
RetCode: 0
Status:   OK  

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL coMET
###
##############################################################################
##############################################################################


* installing to library 'D:/biocbuild/bbs-3.15-bioc/R/library'
* installing *source* package 'coMET' ...
** using staged installation
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'coMET'
    finding HTML links ... done
    COSMIC_UCSC                             html  
    ChIPTF_ENCODE                           html  
    ClinVarCnv_UCSC                         html  
    ClinVarMain_UCSC                        html  
    CoreillCNV_UCSC                         html  
    DNAse_UCSC                              html  
    DNaseI_FANTOM                           html  
    DNaseI_RoadMap                          html  
    GAD_UCSC                                html  
    GWAScatalog_UCSC                        html  
    GeneReviews_UCSC                        html  
    HiCdata2matrix                          html  
    HistoneAll_UCSC                         html  
    HistoneOne_UCSC                         html  
    ISCA_UCSC                               html  
    TFBS_FANTOM                             html  
    bindingMotifsBiomart_ENSEMBL            html  
    check.configVar                         html  
    check.configVar.cometlist               html  
    check.format.mydata                     html  
    chrUCSC2ENSEMBL                         html  
    chromHMM_RoadMap                        html  
    chromatinHMMAll_UCSC                    html  
    chromatinHMMOne_UCSC                    html  
    coMET-package                           html  
    comet                                   html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/comet.html
    comet.list                              html  
    comet.web                               html  
    compute.cormatrix                       html  
    cpgIslands_UCSC                         html  
    cpgPvalue                               html  
    create.color.bar                        html  
    create.color.list                       html  
    create.color.list.large                 html  
    create.symbol.list                      html  
    create.symbol.list.large                html  
    create.tracks.user                      html  
    create.tracks.web                       html  
    createList.trackUser                    html  
    datasets                                html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/otherRegulatoryRegionsTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/otherRegulatoryRegionsTrackSingle.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackMultiple.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatoryEvidenceBiomartTrackSingle.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackMultiple.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatoryFeaturesBiomartTrackSingle.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackAll.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackMultiple.html
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/R/library/00LOCK-coMET/00new/coMET/help/regulatorySegmentsBiomartTrackSingle.html
    dgfootprints_RoadMap                    html  
    draw.legend                             html  
    draw.name.genes.web                     html  
    draw.name.tracks.web                    html  
    draw.plot.annotation                    html  
    draw.plot.axis.data                     html  
    draw.plot.comet                         html  
    draw.plot.comet.nopval                  html  
    draw.plot.comet.web                     html  
    draw.plot.cormatrix.plot                html  
    draw.plot.grid.mydata                   html  
    draw.plot.grid.mydata.large             html  
    draw.plot.grid.mydata.names             html  
    draw.plot.grid.setup                    html  
    draw.plot.linesconnection               html  
    draw.plot.mydata.ggbio                  html  
    eQTL                                    html  
    eQTL_GTEx                               html  
    fix.values                              html  
    fix.values.generic                      html  
    fix.values.large                        html  
    gcContent_UCSC                          html  
    genesName_ENSEMBL                       html  
    genes_ENSEMBL                           html  
    imprintedGenes_GTEx                     html  
    interestGenes_ENSEMBL                   html  
    interestTranscript_ENSEMBL              html  
    knownGenes_UCSC                         html  
    metQTL                                  html  
    miRNATargetRegionsBiomart_ENSEMBL       html  
    otherRegulatoryRegionsBiomart_ENSEMBL   html  
    printPlot.comet                         html  
    printPlot.comet.nopval                  html  
    printPlot.comet.web                     html  
    psiQTL_GTEx                             html  
    read.config                             html  
    read.file.cormatrix                     html  
    read.file.mydata                        html  
    read.file.mydata.large                  html  
    refGenes_UCSC                           html  
    regulationBiomart_ENSEMBL               html  
    regulatoryEvidenceBiomart_ENSEMBL       html  
    regulatoryFeaturesBiomart_ENSEMBL       html  
    regulatorySegmentsBiomart_ENSEMBL       html  
    repeatMasker_UCSC                       html  
    retrieve.data                           html  
    segmentalDups_UCSC                      html  
    set.image.parameters                    html  
    snpBiomart_ENSEMBL                      html  
    snpLocations_UCSC                       html  
    structureBiomart_ENSEMBL                html  
    transcript_ENSEMBL                      html  
    xenorefGenes_UCSC                       html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (coMET)
Making 'packages.html' ...Warning in packageDescription(i, lib.loc = lib, fields = "Title", encoding = "UTF-8") :
  DESCRIPTION file of package 'MEAT' is missing or broken
 done