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This page was generated on 2024-02-28 11:37:26 -0500 (Wed, 28 Feb 2024).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.3 LTS)x86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4671
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2024-01-14 r85805 ucrt) -- "Unsuffered Consequences" 4411
merida1macOS 12.7.1 Montereyx86_64R Under development (unstable) (2024-01-16 r85808) -- "Unsuffered Consequences" 4438
kunpeng2Linux (openEuler 22.03 LTS-SP1)aarch64R Under development (unstable) (2024-01-16 r85812) -- "Unsuffered Consequences" 4414
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

Package 374/2251HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
clusterStab 1.75.0  (landing page)
James W. MacDonald
Snapshot Date: 2024-02-26 14:39:26 -0500 (Mon, 26 Feb 2024)
git_url: https://git.bioconductor.org/packages/clusterStab
git_branch: devel
git_last_commit: a8d0ea2
git_last_commit_date: 2023-10-24 09:35:23 -0500 (Tue, 24 Oct 2023)
nebbiolo1Linux (Ubuntu 22.04.3 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 12.7.1 Monterey / x86_64  OK    OK    OK    OK  UNNEEDED, same version is already published
kunpeng2Linux (openEuler 22.03 LTS-SP1) / aarch64  OK    OK    OK  

BUILD results for clusterStab on palomino3


To the developers/maintainers of the clusterStab package:
- Allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/clusterStab.git to reflect on this report. See Troubleshooting Build Report for more information.
- Use the following Renviron settings to reproduce errors and warnings.
- If 'R CMD check' started to fail recently on the Linux builder(s) over a missing dependency, add the missing dependency to 'Suggests:' in your DESCRIPTION file. See Renviron.bioc for more information.

raw results


Summary

Package: clusterStab
Version: 1.75.0
Command: chmod a+r clusterStab -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data clusterStab
StartedAt: 2024-02-26 19:48:02 -0500 (Mon, 26 Feb 2024)
EndedAt: 2024-02-26 19:48:16 -0500 (Mon, 26 Feb 2024)
EllapsedTime: 14.8 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

##############################################################################
##############################################################################
###
### Running command:
###
###   chmod a+r clusterStab -R && F:\biocbuild\bbs-3.19-bioc\R\bin\R.exe CMD build --keep-empty-dirs --no-resave-data clusterStab
###
##############################################################################
##############################################################################


* checking for file 'clusterStab/DESCRIPTION' ... OK
* preparing 'clusterStab':
* checking DESCRIPTION meta-information ... OK
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building 'clusterStab.Rnw' using Sweave
Loading required package: Biobase
Loading required package: BiocGenerics

Attaching package: 'BiocGenerics'

The following objects are masked from 'package:stats':

    IQR, mad, sd, var, xtabs

The following objects are masked from 'package:base':

    Filter, Find, Map, Position, Reduce, anyDuplicated, aperm, append,
    as.data.frame, basename, cbind, colnames, dirname, do.call,
    duplicated, eval, evalq, get, grep, grepl, intersect, is.unsorted,
    lapply, mapply, match, mget, order, paste, pmax, pmax.int, pmin,
    pmin.int, rank, rbind, rownames, sapply, setdiff, table, tapply,
    union, unique, unsplit, which.max, which.min

Welcome to Bioconductor

    Vignettes contain introductory material; view with
    'browseVignettes()'. To cite Bioconductor, see
    'citation("Biobase")', and for packages 'citation("pkgname")'.

Warning in system(paste(shQuote(texi2dvi), "--version"), intern = TRUE) :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --version' had status 1033
Warning in system(paste(shQuote(texi2dvi), if (quiet) "--quiet" else "",  :
  running command '"C:\PROGRA~1\MiKTeX\miktex\bin\x64\texify.exe" --quiet --pdf "clusterStab.tex" ' had status 1033
Error: processing vignette 'clusterStab.Rnw' failed with diagnostics:
Failed to locate 'texi2pdf' output file 'clusterStab.pdf' for vignette with name 'clusterStab' and engine 'utils::Sweave'. The following files exist in working directory 'F:\biocbuild\bbs-3.19-bioc\tmpdir\RtmpC4l5Bu\Rbuild45801f1d7d48\clusterStab\vignettes': 'clusterStab-002.pdf' (5733 bytes), 'clusterStab-003.pdf' (5579 bytes), 'clusterStab-004.pdf' (8116 bytes), 'clusterStab.Rnw' (8103 bytes), 'clusterStab.tex' (8808 bytes)
--- failed re-building 'clusterStab.Rnw'

SUMMARY: processing the following file failed:
  'clusterStab.Rnw'

Error: Vignette re-building failed.
Execution halted