Back to Multiple platform build/check report for BioC 3.15
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This page was generated on 2022-01-19 11:07:23 -0500 (Wed, 19 Jan 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 20.04.4 LTS)x86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4161
riesling1Windows Server 2019 Standardx64R Under development (unstable) (2021-11-21 r81221) -- "Unsuffered Consequences" 4056
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2021-12-21 r81400 ucrt) -- "Unsuffered Consequences" 3998
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-01-05 r81451) -- "Unsuffered Consequences" 4115
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD BIN results for chromstaR on riesling1


To the developers/maintainers of the chromstaR package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/chromstaR.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? here for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 311/2074HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
chromstaR 1.21.4  (landing page)
Aaron Taudt
Snapshot Date: 2022-01-18 13:55:18 -0500 (Tue, 18 Jan 2022)
git_url: https://git.bioconductor.org/packages/chromstaR
git_branch: master
git_last_commit: 79057fd
git_last_commit_date: 2021-12-14 21:44:02 -0500 (Tue, 14 Dec 2021)
nebbiolo1Linux (Ubuntu 20.04.4 LTS) / x86_64  OK    OK    OK  UNNEEDED, same version is already published
riesling1Windows Server 2019 Standard / x64  OK    OK    OK    OK  
palomino3Windows Server 2022 Datacenter / x64  OK    OK    OK    OK  NO, package depends on 'GenomicRanges' which is not available
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: chromstaR
Version: 1.21.4
Command: rm -rf chromstaR.buildbin-libdir && mkdir chromstaR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=chromstaR.buildbin-libdir chromstaR_1.21.4.tar.gz
StartedAt: 2022-01-18 20:44:29 -0500 (Tue, 18 Jan 2022)
EndedAt: 2022-01-18 20:45:47 -0500 (Tue, 18 Jan 2022)
EllapsedTime: 78.6 seconds
RetCode: 0
Status:   OK  
PackageFile: chromstaR_1.21.4.zip
PackageFileSize: 6.702 MiB

Command output

##############################################################################
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###
### Running command:
###
###   rm -rf chromstaR.buildbin-libdir && mkdir chromstaR.buildbin-libdir && D:\biocbuild\bbs-3.15-bioc\R\bin\R.exe CMD INSTALL --build --library=chromstaR.buildbin-libdir chromstaR_1.21.4.tar.gz
###
##############################################################################
##############################################################################


* installing *source* package 'chromstaR' ...
** using staged installation
** libs
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c R_interface.cpp -o R_interface.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c densities.cpp -o densities.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c init.cpp -o init.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c scalehmm.cpp -o scalehmm.o
"C:/rtools40/mingw64/bin/"g++ -std=gnu++11  -I"D:/biocbuild/bbs-3.15-bioc/R/include" -DNDEBUG     -I"C:/extsoft/include"  -fopenmp   -O2 -Wall  -mfpmath=sse -msse2 -mstackrealign -fno-reorder-blocks-and-partition  -c utility.cpp -o utility.o
C:/rtools40/mingw64/bin/g++ -std=gnu++11 -shared -s -static-libgcc -o chromstaR.dll tmp.def R_interface.o densities.o init.o scalehmm.o utility.o -fopenmp -LC:/extsoft/lib/x64 -LC:/extsoft/lib -LD:/biocbuild/bbs-3.15-bioc/R/bin/x64 -lR
installing to D:/biocbuild/bbs-3.15-bioc/meat/chromstaR.buildbin-libdir/00LOCK-chromstaR/00new/chromstaR/libs/x64
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
  converting help for package 'chromstaR'
    finding HTML links ... done
    Chromstar                               html  
    binReads                                html  
    finding level-2 HTML links ... done

    binned.data                             html  
    callPeaksMultivariate                   html  
    callPeaksReplicates                     html  
    callPeaksUnivariate                     html  
    callPeaksUnivariateAllChr               html  
    changeMaxPostCutoff                     html  
    changePostCutoff                        html  
    chromstaR-objects                       html  
    chromstaR-package                       html  
REDIRECT:topic	 Previous alias or file overwritten by alias: D:/biocbuild/bbs-3.15-bioc/meat/chromstaR.buildbin-libdir/00LOCK-chromstaR/00new/chromstaR/help/chromstaR.html
    collapseBins                            html  
    combinatorialStates                     html  
    combineMultivariates                    html  
    combinedMultiHMM                        html  
    conversion                              html  
    enrichmentAtAnnotation                  html  
    enrichment_analysis                     html  
    experiment.table                        html  
    exportFiles                             html  
    exportGRangesAsBedFile                  html  
    fixedWidthBins                          html  
    genes_rn4                               html  
    genomicFrequencies                      html  
    getCombinations                         html  
    getDistinctColors                       html  
    getStateColors                          html  
    heatmapCombinations                     html  
    heatmapCountCorrelation                 html  
    heatmapTransitionProbs                  html  
    loadHmmsFromFiles                       html  
    mergeChroms                             html  
    model.combined                          html  
    model.multivariate                      html  
    model.univariate                        html  
    multiHMM                                html  
    multivariateSegmentation                html  
    plotExpression                          html  
    plotGenomeBrowser                       html  
    plotHistogram                           html  
    plotHistograms                          html  
    plotting                                html  
    print.combinedMultiHMM                  html  
    print.multiHMM                          html  
    print.uniHMM                            html  
    readBamFileAsGRanges                    html  
    readBedFileAsGRanges                    html  
    readConfig                              html  
    readCustomBedFile                       html  
    removeCondition                         html  
    scanBinsizes                            html  
    scores                                  html  
    simulateMultivariate                    html  
    simulateReadsFromCounts                 html  
    simulateUnivariate                      html  
    state.brewer                            html  
    stateBrewer                             html  
    subsample                               html  
    transitionFrequencies                   html  
    uniHMM                                  html  
    unis2pseudomulti                        html  
    variableWidthBins                       html  
    writeConfig                             html  
    zinbinom                                html  
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* MD5 sums
packaged installation of 'chromstaR' as chromstaR_1.21.4.zip
* DONE (chromstaR)