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This page was generated on 2022-12-09 11:05:27 -0500 (Fri, 09 Dec 2022).

HostnameOSArch (*)R versionInstalled pkgs
nebbiolo1Linux (Ubuntu 22.04.1 LTS)x86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4449
palomino3Windows Server 2022 Datacenterx64R Under development (unstable) (2022-11-30 r83393 ucrt) -- "Unsuffered Consequences" 4194
merida1macOS 10.14.6 Mojavex86_64R Under development (unstable) (2022-11-30 r83393) -- "Unsuffered Consequences" 4237
Click on any hostname to see more info about the system (e.g. compilers)      (*) as reported by 'uname -p', except on Windows and Mac OS X

BUILD results for brendaDb on nebbiolo1


To the developers/maintainers of the brendaDb package:
- Please allow up to 24 hours (and sometimes 48 hours) for your latest push to git@git.bioconductor.org:packages/brendaDb.git to
reflect on this report. See How and When does the builder pull? When will my changes propagate? for more information.
- Make sure to use the following settings in order to reproduce any error or warning you see on this page.

raw results

Package 220/2155HostnameOS / ArchINSTALLBUILDCHECKBUILD BIN
brendaDb 1.13.0  (landing page)
Yi Zhou
Snapshot Date: 2022-12-08 14:00:20 -0500 (Thu, 08 Dec 2022)
git_url: https://git.bioconductor.org/packages/brendaDb
git_branch: master
git_last_commit: 074aba1
git_last_commit_date: 2022-11-01 11:20:22 -0500 (Tue, 01 Nov 2022)
nebbiolo1Linux (Ubuntu 22.04.1 LTS) / x86_64  OK    ERROR  skipped
palomino3Windows Server 2022 Datacenter / x64  OK    ERROR  skippedskipped
merida1macOS 10.14.6 Mojave / x86_64  OK    ERROR  skippedskipped

Summary

Package: brendaDb
Version: 1.13.0
Command: /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data brendaDb
StartedAt: 2022-12-08 16:00:33 -0500 (Thu, 08 Dec 2022)
EndedAt: 2022-12-08 16:01:02 -0500 (Thu, 08 Dec 2022)
EllapsedTime: 28.9 seconds
RetCode: 1
Status:   ERROR  
PackageFile: None
PackageFileSize: NA

Command output

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### Running command:
###
###   /home/biocbuild/bbs-3.17-bioc/R/bin/R CMD build --keep-empty-dirs --no-resave-data brendaDb
###
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* checking for file ‘brendaDb/DESCRIPTION’ ... OK
* preparing ‘brendaDb’:
* checking DESCRIPTION meta-information ... OK
* cleaning src
* installing the package to build vignettes
* creating vignettes ... ERROR
--- re-building ‘brendaDb.Rmd’ using rmarkdown
Loading required namespace: brendaDb
Quitting from lines 136-137 (brendaDb.Rmd) 
Error: processing vignette 'brendaDb.Rmd' failed with diagnostics:
invalid connection
--- failed re-building ‘brendaDb.Rmd’

SUMMARY: processing the following file failed:
  ‘brendaDb.Rmd’

Error: Vignette re-building failed.
Execution halted